Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPSA_RS00205 | Genome accession | NC_017361 |
| Coordinates | 38105..38218 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217877.1 | Uniprot ID | A0A1A9H2U2 |
| Organism | Helicobacter pylori SouthAfrica7 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 33105..43218
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSA_RS00180 (HPSA_00155) | - | 33158..35380 (+) | 2223 | WP_000357230.1 | AAA family ATPase | - |
| HPSA_RS00185 (HPSA_00160) | panD | 35370..35720 (+) | 351 | WP_000142294.1 | aspartate 1-decarboxylase | - |
| HPSA_RS00190 (HPSA_00165) | - | 35731..36024 (+) | 294 | WP_000347932.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPSA_RS00195 (HPSA_00170) | - | 36024..37019 (+) | 996 | WP_000468493.1 | PDZ domain-containing protein | - |
| HPSA_RS00200 (HPSA_00175) | comB6 | 37025..38089 (+) | 1065 | WP_014534702.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPSA_RS00205 (HPSA_00180) | comB7 | 38105..38218 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| HPSA_RS00210 (HPSA_00185) | comB8 | 38215..38958 (+) | 744 | WP_000660575.1 | type IV secretion system protein | Machinery gene |
| HPSA_RS00215 (HPSA_00190) | comB9 | 38958..39938 (+) | 981 | WP_001213934.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPSA_RS00220 (HPSA_00195) | comB10 | 39931..41073 (+) | 1143 | WP_001045896.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPSA_RS00225 (HPSA_00200) | - | 41138..42550 (+) | 1413 | WP_000693966.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4291.23 Da Isoelectric Point: 9.3572
>NTDB_id=46807 HPSA_RS00205 WP_001217877.1 38105..38218(+) (comB7) [Helicobacter pylori SouthAfrica7]
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=46807 HPSA_RS00205 WP_001217877.1 38105..38218(+) (comB7) [Helicobacter pylori SouthAfrica7]
ATGAGAATCTTTTTTGTTATTATGGGACTTGTGTTGTTTGGTTGCACGAGCAAGGTGCATGAAATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAACCTTGCATGA
ATGAGAATCTTTTTTGTTATTATGGGACTTGTGTTGTTTGGTTGCACGAGCAAGGTGCATGAAATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAACCTTGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
97.297 |
100 |
0.973 |