Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HS057_RS05425 Genome accession   NZ_CP059241
Coordinates   1045948..1047096 (-) Length   382 a.a.
NCBI ID   WP_240020343.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0019     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1040948..1052096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS057_RS05395 (HS057_05345) rplK 1041208..1041636 (-) 429 WP_240020339.1 50S ribosomal protein L11 -
  HS057_RS05400 (HS057_05350) nusG 1041869..1042432 (-) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  HS057_RS05405 (HS057_05355) secE 1042434..1042850 (-) 417 WP_240030122.1 preprotein translocase subunit SecE -
  HS057_RS05410 (HS057_05360) - 1042963..1043988 (-) 1026 WP_240020341.1 LacI family DNA-binding transcriptional regulator -
  HS057_RS05415 (HS057_05365) - 1044219..1044488 (+) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  HS057_RS05420 (HS057_05370) - 1044501..1045853 (+) 1353 WP_409038108.1 PTS ascorbate transporter subunit IIC -
  HS057_RS05425 (HS057_05375) dprA 1045948..1047096 (-) 1149 WP_240020343.1 DNA-processing protein DprA Machinery gene
  HS057_RS05430 (HS057_05380) def 1047185..1047697 (+) 513 WP_006248765.1 peptide deformylase -
  HS057_RS05435 (HS057_05385) rfaD 1047791..1048720 (+) 930 WP_240020345.1 ADP-glyceromanno-heptose 6-epimerase -
  HS057_RS05440 (HS057_05390) fabA 1048787..1049317 (-) 531 WP_240020346.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  HS057_RS05445 (HS057_05395) - 1049431..1051068 (-) 1638 WP_006248768.1 AAA family ATPase -
  HS057_RS05450 (HS057_05400) matP 1051161..1051607 (+) 447 Protein_1042 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42479.25 Da        Isoelectric Point: 4.9609

>NTDB_id=468054 HS057_RS05425 WP_240020343.1 1045948..1047096(-) (dprA) [Mannheimia haemolytica strain 0019]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLF
DENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQXIVM
EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITAR
YALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAXN
LPSLTACQQQIYQHISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=468054 HS057_RS05425 WP_240020343.1 1045948..1047096(-) (dprA) [Mannheimia haemolytica strain 0019]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGTTTAATCCTGATCAAAAGTGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTCTTT
GATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAGCCT
TTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTGCCG
AATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCAANAAATCGTTATG
GAACAAGGCATAACGATTGCCGTGTTAGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGAACA
AATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTCGCCTAATCAGCCGCCGGTGGCAGAAAATTTTCCTCGTCGTA
ATCGAATTATTAGTGGCTTATCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGTTCACTGATTACCGCTCGT
TATGCCCTTGAACAAGGTAGGGAAGTGTTTGCGTTACCGAATGCGGTACAAAACCCTTACGCACAAGGTTGCCACAAGCT
AATTAAAGAAGGGGCATTGCTCGTGGAAGGTGTGGAAGATATTTTAGAGGTGGTCGCCTCGCAATATCAACCTCAGCAAA
TCCCTTTGTTTGATGAGTCTAAGCCAACAGTAAGCACATCTTTACAAGCGGTCAAAAACAGCGAAAAATTCGCANAAAAT
CTGCCAAGTCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCGATGGCAATTGATGATTTAGCCAA
AGTTACGGAGTTGACGATTGAAATATTGCTGGTTGAATTACTGGGTCTGGAATTAGCCGGTGTGATTAAACAAGTGAGTG
GGGGGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-375)

DNA recombination-mediator protein A (DNA_processg_A)

(73-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.351

99.215

0.728
  dprA Haemophilus influenzae Rd KW20

51.304

90.314

0.463
  dprA Vibrio campbellii strain DS40M4

44.744

97.12

0.435
  dprA Vibrio cholerae strain A1552

42.588

97.12

0.414
  dprA Legionella pneumophila strain ERS1305867

40.29

90.314

0.364