Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS058_RS09045 Genome accession   NZ_CP059240
Coordinates   1776002..1776340 (-) Length   112 a.a.
NCBI ID   WP_240028462.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0039     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1771002..1781340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS058_RS09035 (HS058_09000) hsdR 1772519..1774870 (-) 2352 WP_409044569.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  HS058_RS09040 (HS058_09005) asd 1774942..1775838 (-) 897 WP_409044570.1 archaetidylserine decarboxylase -
  HS058_RS09045 (HS058_09010) comEA/comE1 1776002..1776340 (-) 339 WP_240028462.1 ComEA family DNA-binding protein Machinery gene
  HS058_RS09050 (HS058_09015) - 1776632..1777963 (+) 1332 WP_409042098.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS058_RS09055 (HS058_09020) - 1778027..1778443 (+) 417 WP_240024996.1 MliC family protein -
  HS058_RS09060 (HS058_09025) waaF 1778554..1779591 (+) 1038 WP_006250331.1 lipopolysaccharide heptosyltransferase II -
  HS058_RS09065 (HS058_09030) rfaC 1779656..1780615 (+) 960 WP_409044571.1 lipopolysaccharide heptosyltransferase RfaC -
  HS058_RS09070 (HS058_09035) rpsL 1780736..1781110 (+) 375 WP_240024998.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12093.33 Da        Isoelectric Point: 8.5970

>NTDB_id=468036 HS058_RS09045 WP_240028462.1 1776002..1776340(-) (comEA/comE1) [Mannheimia haemolytica strain 0039]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKXAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEXNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=468036 HS058_RS09045 WP_240028462.1 1776002..1776340(-) (comEA/comE1) [Mannheimia haemolytica strain 0039]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAANAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAANAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.522

100

0.58
  comEA Vibrio cholerae C6706

53.488

76.786

0.411
  comEA Vibrio cholerae strain A1552

53.488

76.786

0.411
  comE1/comEA Haemophilus influenzae Rd KW20

50.549

81.25

0.411