Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HS058_RS07685 Genome accession   NZ_CP059240
Coordinates   1502936..1504087 (+) Length   383 a.a.
NCBI ID   WP_409044523.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0039     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1497936..1509087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS058_RS07660 (HS058_07635) matP 1498424..1498870 (-) 447 Protein_1495 macrodomain Ter protein MatP -
  HS058_RS07665 (HS058_07640) - 1498963..1500600 (+) 1638 WP_409044522.1 AAA family ATPase -
  HS058_RS07670 (HS058_07645) fabA 1500713..1501243 (+) 531 WP_240017519.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  HS058_RS07675 (HS058_07650) rfaD 1501311..1502240 (-) 930 WP_240020345.1 ADP-glyceromanno-heptose 6-epimerase -
  HS058_RS07680 (HS058_07655) def 1502334..1502846 (-) 513 WP_006248765.1 peptide deformylase -
  HS058_RS07685 (HS058_07660) dprA 1502936..1504087 (+) 1152 WP_409044523.1 DNA-processing protein DprA Machinery gene
  HS058_RS07690 (HS058_07665) - 1504182..1505534 (-) 1353 WP_409038108.1 PTS ascorbate transporter subunit IIC -
  HS058_RS07695 (HS058_07670) - 1505547..1505816 (-) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  HS058_RS07700 (HS058_07675) - 1506047..1507072 (+) 1026 WP_409042397.1 LacI family DNA-binding transcriptional regulator -
  HS058_RS07705 (HS058_07680) secE 1507185..1507601 (+) 417 WP_409043229.1 preprotein translocase subunit SecE -
  HS058_RS07710 (HS058_07685) nusG 1507603..1508166 (+) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  HS058_RS07715 (HS058_07690) rplK 1508399..1508827 (+) 429 WP_240021374.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 42616.71 Da        Isoelectric Point: 5.2272

>NTDB_id=468033 HS058_RS07685 WP_409044523.1 1502936..1504087(+) (dprA) [Mannheimia haemolytica strain 0039]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWXFNPDQKWIDQAMTWSELPNQQIVTL
FDENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQKIV
MEQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITA
RYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAK
NLPSLTACQQQIYQHISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=468033 HS058_RS07685 WP_409044523.1 1502936..1504087(+) (dprA) [Mannheimia haemolytica strain 0039]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGNNTTTTAATCCTGATCAAAAGTGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTC
TTTGATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAG
CCTTTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTG
CCGAATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCAAAAAATCGTT
ATGGAACAAGGCATAACGATTGCCGTGTTAGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGA
ACAAATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTCGCCTAATCAGCCGCCGGTGGCAGAAAATTTTCCTCGTC
GTAATCGAATTATTAGTGGCTTATCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGTTCACTGATTACCGCT
CGTTATGCCCTTGAACAAGGTAGGGAAGTGTTTGCGTTACCGAATGCGGTACAAAACCCTTACGCACAAGGTTGCCACAA
GCTAATTAAAGAAGGGGCATTGCTCGTGGAAGGTGTGGAAGATATTTTAGAGGTGGTCGCCTCGCAATATCAACCTCAGC
AAATCCCTTTGTTTGATGAGTCTAAGCCAACAGTAAGCACATCTTTACAAGCGGTCAAAAACAGCGAAAAATTCGCAAAA
AATCTGCCAAGTCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCGATGGCAATTGATGATTTAGC
CAAAGTTACGGAGTTGACGATTGAAATATTGCTGGTTGAATTACTGGGTCTGGAATTAGCCGGTGTGATTAAACAAGTGA
GTGGGGGGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-276)

DprA winged helix domain (DprA_WH)

(318-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.421

99.217

0.728
  dprA Haemophilus influenzae Rd KW20

51.156

90.339

0.462
  dprA Vibrio campbellii strain DS40M4

44.355

97.128

0.431
  dprA Vibrio cholerae strain A1552

42.473

97.128

0.413
  dprA Legionella pneumophila strain ERS1305867

40.346

90.601

0.366