Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HS059_RS11755 Genome accession   NZ_CP059239
Coordinates   2311870..2312280 (+) Length   136 a.a.
NCBI ID   WP_409038163.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0086     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2306870..2317280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS059_RS11730 (HS059_11675) - 2307381..2308145 (-) 765 WP_409037685.1 TSUP family transporter -
  HS059_RS11735 (HS059_11680) proB 2308145..2309230 (-) 1086 WP_409037686.1 glutamate 5-kinase -
  HS059_RS11740 (HS059_11685) folA 2309342..2309836 (+) 495 WP_006248397.1 type 3 dihydrofolate reductase -
  HS059_RS11745 (HS059_11690) - 2309955..2310185 (+) 231 WP_006248398.1 YgjV family protein -
  HS059_RS11750 (HS059_11695) radA 2310240..2311619 (-) 1380 WP_409037687.1 DNA repair protein RadA -
  HS059_RS11755 (HS059_11700) pilA 2311870..2312280 (+) 411 WP_409038163.1 pilin Machinery gene
  HS059_RS11760 (HS059_11705) - 2312301..2312744 (+) 444 Protein_2270 pilus assembly protein PilB -
  HS059_RS11765 (HS059_11710) pilC 2312750..2313946 (+) 1197 WP_409037688.1 type II secretion system F family protein Machinery gene
  HS059_RS11770 - 2314225..2314431 (+) 207 Protein_2272 peptidase A24 -
  HS059_RS11775 (HS059_11720) coaE 2314645..2315280 (+) 636 WP_006248405.1 dephospho-CoA kinase -
  HS059_RS11780 (HS059_11725) yacG 2315262..2315447 (+) 186 WP_006248406.1 DNA gyrase inhibitor YacG -
  HS059_RS11785 (HS059_11730) holA 2315448..2316473 (-) 1026 WP_409038164.1 DNA polymerase III subunit delta -
  HS059_RS11790 (HS059_11735) lptE 2316516..2317034 (-) 519 WP_409037689.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14060.49 Da        Isoelectric Point: 7.5809

>NTDB_id=468018 HS059_RS11755 WP_409038163.1 2311870..2312280(+) (pilA) [Mannheimia haemolytica strain 0086]
MIVIAIIAILATIAIPSYNSYTQKAALSELLQXASASYKSDVEVCIYNSGGLDNCSGGTNGIQANKTSSNTTKYLNSIAV
TKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG

Nucleotide


Download         Length: 411 bp        

>NTDB_id=468018 HS059_RS11755 WP_409038163.1 2311870..2312280(+) (pilA) [Mannheimia haemolytica strain 0086]
ATGATCGTGATTGCGATTATTGCCATTCTTGCCACTATTGCGATCCCTTCCTATAACTCATACACCCAAAAGGCGGCGTT
ATCGGAGTTATTACAANNAGCATCTGCTTCGTATAAATCAGACGTTGAAGTCTGTATTTACAACAGTGGCGGGTTGGATA
ACTGCTCCGGTGGCACGAATGGGATTCAGGCGAATAAAACCAGTAGTAATACCACTAAATACCTAAACTCAATTGCGGTA
ACAAAAGGCGTGATTACGGTAACCGGCAAAGGCTCTCTGAATGGTTATGGCTATACCTTAACACCGTCGTTCTCAAATAA
TACGATTAGTTGGACGGCAAGTTGTAGTGGCAATGATACGAGCCTATTTCCAGCTAATTTCTGTAGCACAACTGTTACAC
CAAACGGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

63.636

88.971

0.566
  pilA Haemophilus influenzae 86-028NP

50.862

85.294

0.434
  pilA Haemophilus influenzae Rd KW20

49.573

86.029

0.426