Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HS059_RS06325 Genome accession   NZ_CP059239
Coordinates   1228441..1229589 (-) Length   382 a.a.
NCBI ID   WP_409038109.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0086     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1223441..1234589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS059_RS06295 (HS059_06230) rplK 1223701..1224129 (-) 429 WP_006248758.1 50S ribosomal protein L11 -
  HS059_RS06300 (HS059_06235) nusG 1224362..1224925 (-) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  HS059_RS06305 (HS059_06240) secE 1224927..1225343 (-) 417 WP_275686772.1 preprotein translocase subunit SecE -
  HS059_RS06310 (HS059_06245) - 1225456..1226481 (-) 1026 WP_240020341.1 LacI family DNA-binding transcriptional regulator -
  HS059_RS06315 (HS059_06250) - 1226712..1226981 (+) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  HS059_RS06320 (HS059_06255) - 1226994..1228346 (+) 1353 WP_409038108.1 PTS ascorbate transporter subunit IIC -
  HS059_RS06325 (HS059_06260) dprA 1228441..1229589 (-) 1149 WP_409038109.1 DNA-processing protein DprA Machinery gene
  HS059_RS06330 (HS059_06265) def 1229678..1230190 (+) 513 WP_006248765.1 peptide deformylase -
  HS059_RS06335 (HS059_06270) rfaD 1230284..1231213 (+) 930 WP_240020345.1 ADP-glyceromanno-heptose 6-epimerase -
  HS059_RS06340 (HS059_06275) fabA 1231281..1231811 (-) 531 WP_240028514.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  HS059_RS06345 (HS059_06280) - 1231924..1233561 (-) 1638 WP_409038110.1 AAA family ATPase -
  HS059_RS06350 (HS059_06285) matP 1233654..1234103 (+) 450 WP_409038111.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42507.31 Da        Isoelectric Point: 5.0805

>NTDB_id=468011 HS059_RS06325 WP_409038109.1 1228441..1229589(-) (dprA) [Mannheimia haemolytica strain 0086]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLF
DENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQXIVM
EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNRPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITAR
YALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAXN
LPSLTACQQQIYQHISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=468011 HS059_RS06325 WP_409038109.1 1228441..1229589(-) (dprA) [Mannheimia haemolytica strain 0086]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGTTTAATCCTGATCAAAAGTGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTCTTT
GATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAGCCT
TTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTGCCG
AATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCAANAAATCGTTATG
GAACAAGGCATAACGATTGCCGTGTTAGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGAACA
AATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTCGCCTAATCGGCCGCCGGTGGCAGAAAATTTTCCTCGTCGTA
ATCGAATTATTAGTGGCTTATCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGTTCACTGATTACCGCTCGT
TATGCCCTTGAACAAGGTAGGGAAGTGTTTGCGTTACCGAATGCGGTACAAAACCCTTACGCACAAGGTTGCCACAAGCT
AATTAAAGAAGGGGCATTGCTCGTGGAAGGTGTGGAAGATATTTTAGAGGTGGTCGCCTCGCAATATCAACCTCAGCAAA
TCCCTTTGTTTGATGAGTCTAAGCCAACAGTAAGCACATCTTTACAAGCGGTCAAAAACAGCGAAAAATTCGCANAAAAT
CTGCCAAGTCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCGATGGCAATTGATGATTTAGCCAA
AGTTACGGAGTTGACGATTGAAATATTGCTGGTTGAATTACTGGGTCTGGAATTAGCCGGTGTGATTAAACAAGTGAGTG
GGGGGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-375)

DNA recombination-mediator protein A (DNA_processg_A)

(73-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.087

99.215

0.725
  dprA Haemophilus influenzae Rd KW20

51.014

90.314

0.461
  dprA Vibrio campbellii strain DS40M4

44.744

97.12

0.435
  dprA Vibrio cholerae strain A1552

42.588

97.12

0.414
  dprA Legionella pneumophila strain ERS1305867

40.29

90.314

0.364