Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS059_RS04965 Genome accession   NZ_CP059239
Coordinates   956227..956565 (+) Length   112 a.a.
NCBI ID   WP_240020236.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0086     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 951227..961565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS059_RS04940 (HS059_04890) rpsL 951451..951825 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  HS059_RS04945 (HS059_04895) rfaC 951946..952905 (-) 960 WP_409038043.1 lipopolysaccharide heptosyltransferase RfaC -
  HS059_RS04950 (HS059_04900) waaF 952970..954010 (-) 1041 WP_409038044.1 lipopolysaccharide heptosyltransferase II -
  HS059_RS04955 (HS059_04905) - 954121..954537 (-) 417 WP_409037003.1 MliC family protein -
  HS059_RS04960 (HS059_04910) - 954601..955935 (-) 1335 WP_409038045.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS059_RS04965 (HS059_04915) comEA/comE1 956227..956565 (+) 339 WP_240020236.1 ComEA family DNA-binding protein Machinery gene
  HS059_RS04970 (HS059_04920) asd 956732..957625 (+) 894 WP_409038046.1 archaetidylserine decarboxylase -
  HS059_RS04975 (HS059_04925) hsdR 957697..960048 (+) 2352 WP_409038047.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12130.67 Da        Isoelectric Point: 9.7700

>NTDB_id=468008 HS059_RS04965 WP_240020236.1 956227..956565(+) (comEA/comE1) [Mannheimia haemolytica strain 0086]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQXKAQAIVDYRT
KNGNFKNIEQLVEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=468008 HS059_RS04965 WP_240020236.1 956227..956565(+) (comEA/comE1) [Mannheimia haemolytica strain 0086]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAANAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGTTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.407

100

0.589
  comE1/comEA Haemophilus influenzae Rd KW20

51.648

81.25

0.42
  comEA Vibrio cholerae C6706

53.488

76.786

0.411
  comEA Vibrio cholerae strain A1552

53.488

76.786

0.411