Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HS060_RS06805 Genome accession   NZ_CP059238
Coordinates   1391511..1391990 (-) Length   159 a.a.
NCBI ID   WP_020831302.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0152     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386511..1396990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS060_RS06775 (HS060_06770) yacG 1387409..1387594 (-) 186 WP_006248406.1 DNA gyrase inhibitor YacG -
  HS060_RS06780 (HS060_06775) coaE 1387576..1388211 (-) 636 WP_020831305.1 dephospho-CoA kinase -
  HS060_RS06785 - 1388425..1388631 (-) 207 Protein_1312 peptidase A24 -
  HS060_RS06790 - 1388702..1388905 (-) 204 WP_240018335.1 hypothetical protein -
  HS060_RS06795 (HS060_06785) - 1388908..1390103 (-) 1196 Protein_1314 type II secretion system F family protein -
  HS060_RS06800 (HS060_06790) pilB 1390087..1391490 (-) 1404 WP_240020920.1 GspE/PulE family protein Machinery gene
  HS060_RS06805 (HS060_06795) pilA 1391511..1391990 (-) 480 WP_020831302.1 prepilin peptidase-dependent pilin Machinery gene
  HS060_RS06810 (HS060_06800) radA 1392171..1393553 (+) 1383 WP_409035840.1 DNA repair protein RadA -
  HS060_RS06815 (HS060_06805) - 1393608..1393838 (-) 231 WP_006251345.1 YgjV family protein -
  HS060_RS06820 (HS060_06810) - 1393957..1394451 (-) 495 WP_240018338.1 dihydrofolate reductase -
  HS060_RS06825 (HS060_06815) proB 1394563..1395654 (+) 1092 WP_240018339.1 glutamate 5-kinase -
  HS060_RS06830 (HS060_06820) - 1395654..1396427 (+) 774 WP_409035841.1 TSUP family transporter -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 16855.17 Da        Isoelectric Point: 8.7964

>NTDB_id=467989 HS060_RS06805 WP_020831302.1 1391511..1391990(-) (pilA) [Mannheimia haemolytica strain 0152]
MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLQASASYKSDVELCIYNSGGLDNCSG
GTNGIQANKTSSNTTKYLNSIAVTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG

Nucleotide


Download         Length: 480 bp        

>NTDB_id=467989 HS060_RS06805 WP_020831302.1 1391511..1391990(-) (pilA) [Mannheimia haemolytica strain 0152]
ATGCAAAAAATTGTACATTTTCGACCGCTTGGCATTCGCCAACTGCATCGGGCATTTACCCTAATTGAGTTGATGATCGT
GATTGCGATTATTGCCATTCTTGCCACCATTGCGATCCCTTCCTATAACTCATACACCCAAAAGGCGGCGTTATCGGAGT
TATTGCAAGCCTCTGCTTCGTATAAATCAGACGTTGAACTCTGTATTTACAACAGTGGCGGGCTGGATAACTGCTCCGGT
GGCACGAATGGGATTCAGGCGAATAAAACCAGTAGTAATACCACTAAATACCTAAACTCAATTGCGGTAACAAAAGGCGT
GATTACGGTAACCGGCAAAGGCTCTCTGAATGGTTATGGCTATACCTTAACACCGTCGTTCTCAAATAATACGATTAGTT
GGACGGCAAGTTGTAGTGGCAATGATACGAGCCTATTTCCAGCTAATTTCTGTAGCACAACTGTTACACCAAACGGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(16-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

66.038

100

0.66
  pilA Haemophilus influenzae 86-028NP

57.143

88.05

0.503
  pilA Haemophilus influenzae Rd KW20

55.634

89.308

0.497