Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS060_RS00685 Genome accession   NZ_CP059238
Coordinates   134502..134840 (-) Length   112 a.a.
NCBI ID   WP_240028462.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0152     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 129502..139840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS060_RS00670 (HS060_00665) - 129505..130974 (-) 1470 WP_409036054.1 N-6 DNA methylase -
  HS060_RS00675 (HS060_00670) hsdR 131022..133373 (-) 2352 WP_409036055.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  HS060_RS00680 (HS060_00675) asd 133445..134338 (-) 894 WP_409036056.1 archaetidylserine decarboxylase -
  HS060_RS00685 (HS060_00680) comEA/comE1 134502..134840 (-) 339 WP_240028462.1 ComEA family DNA-binding protein Machinery gene
  HS060_RS00690 (HS060_00685) - 135133..136452 (+) 1320 WP_006251645.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS060_RS00695 (HS060_00690) - 136512..136928 (+) 417 WP_240028219.1 MliC family protein -
  HS060_RS00700 (HS060_00695) waaF 137038..138075 (+) 1038 WP_020824266.1 lipopolysaccharide heptosyltransferase II -
  HS060_RS00705 (HS060_00700) rfaC 138142..139101 (+) 960 WP_240024997.1 lipopolysaccharide heptosyltransferase RfaC -
  HS060_RS00710 (HS060_00705) rpsL 139222..139596 (+) 375 WP_240024998.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12093.33 Da        Isoelectric Point: 8.5970

>NTDB_id=467978 HS060_RS00685 WP_240028462.1 134502..134840(-) (comEA/comE1) [Mannheimia haemolytica strain 0152]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKXAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEXNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=467978 HS060_RS00685 WP_240028462.1 134502..134840(-) (comEA/comE1) [Mannheimia haemolytica strain 0152]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCCAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAANAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAANAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.522

100

0.58
  comEA Vibrio cholerae C6706

53.488

76.786

0.411
  comEA Vibrio cholerae strain A1552

53.488

76.786

0.411
  comE1/comEA Haemophilus influenzae Rd KW20

50.549

81.25

0.411