Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HS062_RS05475 Genome accession   NZ_CP059236
Coordinates   1049472..1050617 (-) Length   381 a.a.
NCBI ID   WP_409046415.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0593     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1044472..1055617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS062_RS05445 (HS062_05430) rplK 1044733..1045155 (-) 423 Protein_1050 50S ribosomal protein L11 -
  HS062_RS05450 (HS062_05435) nusG 1045393..1045956 (-) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  HS062_RS05455 (HS062_05440) secE 1045958..1046374 (-) 417 WP_275686772.1 preprotein translocase subunit SecE -
  HS062_RS05460 (HS062_05445) - 1046487..1047509 (-) 1023 WP_275686773.1 LacI family DNA-binding transcriptional regulator -
  HS062_RS05465 (HS062_05450) - 1047740..1048009 (+) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  HS062_RS05470 (HS062_05455) - 1048022..1049377 (+) 1356 WP_006251920.1 PTS ascorbate transporter subunit IIC -
  HS062_RS05475 (HS062_05460) dprA 1049472..1050617 (-) 1146 WP_409046415.1 DNA-processing protein DprA Machinery gene
  HS062_RS05480 (HS062_05465) def 1050706..1051218 (+) 513 WP_006248765.1 peptide deformylase -
  HS062_RS05485 (HS062_05470) rfaD 1051312..1052238 (+) 927 WP_006248766.1 ADP-glyceromanno-heptose 6-epimerase -
  HS062_RS05490 (HS062_05475) fabA 1052314..1052844 (-) 531 WP_240028514.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  HS062_RS05495 (HS062_05480) - 1052958..1054595 (-) 1638 WP_409046416.1 AAA family ATPase -
  HS062_RS05500 (HS062_05485) matP 1054688..1055134 (+) 447 WP_240028295.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 42237.12 Da        Isoelectric Point: 5.0956

>NTDB_id=467940 HS062_RS05475 WP_409046415.1 1049472..1050617(-) (dprA) [Mannheimia haemolytica strain 0593]
MAYQYDLLRLLQVQIGPQRIGRLLAELDFAEFCAYDKTQLRQIGWNEKQIQRWFNPDKNWIEQALTWAEQPNQQILSLFD
KAYPFLLRQISTAPPILFVKGNVESLSLPQIAIVGSRDYSPYGEYWAGQFAADLVKHNMAVTSGLAIGIDGFAHKKVVEY
QGITIAVLGSGLNRIYPARHQKLAEQIVESGGALVSEFSPNQPPIAENFPRRNRIISGLSLGTLVIEATINSGSLITARY
ALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEXGEDILEAVASQYQPQQIPLFDEPKPIVSTSLQAVKSSEKFAKNP
PNLTACQQQIYQHISLEPIAIDDLARATELTIETLLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=467940 HS062_RS05475 WP_409046415.1 1049472..1050617(-) (dprA) [Mannheimia haemolytica strain 0593]
ATGGCATATCAGTATGATTTATTGCGTTTGTTGCAGGTGCAAATTGGTCCGCAGCGAATCGGACGGTTATTGGCAGAGTT
GGATTTTGCCGAATTTTGTGCCTACGATAAAACACAGTTAAGGCAGATCGGCTGGAATGAAAAGCAGATTCAGCGTTGGT
TTAATCCGGATAAAAATTGGATTGAGCAGGCACTAACTTGGGCGGAGCAGCCGAATCAGCAAATCCTGAGTTTATTTGAT
AAAGCTTATCCTTTCTTGCTGCGGCAAATTTCCACCGCTCCGCCGATTTTATTTGTAAAGGGTAATGTCGAAAGCCTTTC
CTTACCGCAAATTGCGATTGTTGGGAGTCGGGATTATTCGCCCTACGGTGAATATTGGGCGGGGCAATTTGCCGCTGACT
TGGTGAAGCACAATATGGCGGTGACTAGCGGTTTAGCGATTGGCATTGACGGTTTTGCACATAAAAAAGTAGTGGAATAT
CAAGGTATTACGATTGCTGTGTTGGGCAGTGGCTTAAACCGGATTTACCCCGCACGCCATCAAAAACTGGCTGAACAAAT
TGTCGAGTCAGGTGGTGCGTTGGTGTCTGAATTTTCACCTAATCAGCCTCCGATTGCTGAAAATTTCCCACGCCGAAACC
GCATAATCAGCGGTTTATCGCTCGGCACTTTGGTGATTGAAGCAACCATTAATAGTGGCTCTTTAATTACCGCTCGCTAT
GCCCTTGAACAAGGTCGGGAGGTGTTTGCGTTACCGAATGCGGTGCAAAACCCTTACGCACAAGGTTGCCACAAGCTAAT
TAAAGAAGGGGCGTTGCTTGTGGAGNGGGGGGAAGATATTTTAGAGGCGGTCGCCTCTCAATATCAACCTCAACAAATCC
CTTTGTTTGATGAGCCTAAGCCAATAGTAAGCACATCTTTACAAGCGGTCAAAAGTAGCGAAAAATTTGCAAAAAATCCG
CCAAATCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCTATAGCGATTGACGATTTAGCCAGAGC
TACAGAGTTAACGATTGAGACATTGCTAGTTGAATTACTGGGGCTGGAATTAGCCGGCGTAATTAAACAAGTGAGTGGGG
GGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-275)

DprA winged helix domain (DprA_WH)

(316-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.016

100

0.74
  dprA Haemophilus influenzae Rd KW20

51.02

90.026

0.459
  dprA Vibrio campbellii strain DS40M4

45.355

96.063

0.436
  dprA Vibrio cholerae strain A1552

41.758

95.538

0.399
  dprA Legionella pneumophila strain ERS1305867

40.988

90.289

0.37