Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS062_RS04205 Genome accession   NZ_CP059236
Coordinates   823008..823346 (+) Length   112 a.a.
NCBI ID   WP_409046380.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0593     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 818008..828346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS062_RS04180 (HS062_04160) rpsL 818297..818671 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  HS062_RS04185 (HS062_04165) rfaC 818792..819751 (-) 960 WP_240020234.1 lipopolysaccharide heptosyltransferase RfaC -
  HS062_RS04190 (HS062_04170) waaF 819817..820854 (-) 1038 WP_020824266.1 lipopolysaccharide heptosyltransferase II -
  HS062_RS04195 (HS062_04175) - 820965..821381 (-) 417 WP_409046379.1 MliC family protein -
  HS062_RS04200 (HS062_04180) - 821441..822715 (-) 1275 WP_142778023.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS062_RS04205 (HS062_04185) comEA/comE1 823008..823346 (+) 339 WP_409046380.1 ComEA family DNA-binding protein Machinery gene
  HS062_RS04210 (HS062_04190) asd 823510..824403 (+) 894 WP_409046381.1 archaetidylserine decarboxylase -
  HS062_RS04215 (HS062_04195) hsdR 824475..826826 (+) 2352 WP_409038047.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  HS062_RS04220 (HS062_04200) - 826874..828343 (+) 1470 WP_409046382.1 N-6 DNA methylase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12093.33 Da        Isoelectric Point: 8.5970

>NTDB_id=467938 HS062_RS04205 WP_409046380.1 823008..823346(+) (comEA/comE1) [Mannheimia haemolytica strain 0593]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQXKAQAIVDYRT
XNGNFKNIEQLAEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=467938 HS062_RS04205 WP_409046380.1 823008..823346(+) (comEA/comE1) [Mannheimia haemolytica strain 0593]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCCAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAANAAAGCTCAAGCGATTGTCGATTACCGTACT
AANAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.522

100

0.58
  comEA Vibrio cholerae C6706

53.488

76.786

0.411
  comEA Vibrio cholerae strain A1552

53.488

76.786

0.411
  comE1/comEA Haemophilus influenzae Rd KW20

50.549

81.25

0.411