Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS063_RS02775 Genome accession   NZ_CP059235
Coordinates   532098..532439 (+) Length   113 a.a.
NCBI ID   WP_409039238.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0596     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 527098..537439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS063_RS02750 (HS063_02740) rpsL 527320..527694 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  HS063_RS02755 (HS063_02745) rfaC 527815..528774 (-) 960 WP_240020234.1 lipopolysaccharide heptosyltransferase RfaC -
  HS063_RS02760 (HS063_02750) waaF 528840..529880 (-) 1041 WP_409038044.1 lipopolysaccharide heptosyltransferase II -
  HS063_RS02765 (HS063_02755) - 529901..530407 (-) 507 WP_409039237.1 MliC family protein -
  HS063_RS02770 (HS063_02760) - 530471..531805 (-) 1335 WP_409038045.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS063_RS02775 (HS063_02765) comEA/comE1 532098..532439 (+) 342 WP_409039238.1 ComEA family DNA-binding protein Machinery gene
  HS063_RS02780 (HS063_02770) asd 532603..533499 (+) 897 WP_409039239.1 archaetidylserine decarboxylase -
  HS063_RS02785 (HS063_02775) hsdR 533571..535922 (+) 2352 WP_409039240.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12221.51 Da        Isoelectric Point: 9.7700

>NTDB_id=467915 HS063_RS02775 WP_409039238.1 532098..532439(+) (comEA/comE1) [Mannheimia haemolytica strain 0596]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQXKAQAIVDYRT
KNGNFKNIEQLAXEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=467915 HS063_RS02775 WP_409039238.1 532098..532439(+) (comEA/comE1) [Mannheimia haemolytica strain 0596]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAANAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTNNTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCG
AGCCAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.895

100

0.584
  comE1/comEA Haemophilus influenzae Rd KW20

51.087

81.416

0.416
  comEA Vibrio cholerae C6706

52.874

76.991

0.407
  comEA Vibrio cholerae strain A1552

52.874

76.991

0.407