Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS064_RS05195 Genome accession   NZ_CP059234
Coordinates   1022117..1022458 (+) Length   113 a.a.
NCBI ID   WP_409038628.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0611     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1017117..1027458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS064_RS05170 (HS064_05130) rpsL 1017340..1017717 (-) 378 WP_409039956.1 30S ribosomal protein S12 -
  HS064_RS05175 (HS064_05135) rfaC 1017838..1018797 (-) 960 WP_240020234.1 lipopolysaccharide heptosyltransferase RfaC -
  HS064_RS05180 (HS064_05140) waaF 1018863..1019900 (-) 1038 WP_006250331.1 lipopolysaccharide heptosyltransferase II -
  HS064_RS05185 (HS064_05145) - 1020010..1020426 (-) 417 WP_409037003.1 MliC family protein -
  HS064_RS05190 (HS064_05150) - 1020490..1021824 (-) 1335 WP_409039957.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS064_RS05195 (HS064_05155) comEA/comE1 1022117..1022458 (+) 342 WP_409038628.1 ComEA family DNA-binding protein Machinery gene
  HS064_RS05200 (HS064_05160) asd 1022622..1023515 (+) 894 Protein_1009 archaetidylserine decarboxylase -
  HS064_RS05205 (HS064_05165) hsdR 1023587..1025941 (+) 2355 WP_409039958.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  HS064_RS05210 (HS064_05170) - 1025989..1027458 (+) 1470 WP_409039959.1 N-6 DNA methylase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12230.80 Da        Isoelectric Point: 10.0993

>NTDB_id=467895 HS064_RS05195 WP_409038628.1 1022117..1022458(+) (comEA/comE1) [Mannheimia haemolytica strain 0611]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAXEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=467895 HS064_RS05195 WP_409038628.1 1022117..1022458(+) (comEA/comE1) [Mannheimia haemolytica strain 0611]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTNNTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCG
AGCCAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

100

0.593
  comE1/comEA Haemophilus influenzae Rd KW20

52.174

81.416

0.425
  comEA Vibrio cholerae C6706

54.023

76.991

0.416
  comEA Vibrio cholerae strain A1552

54.023

76.991

0.416