Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS065_RS10835 Genome accession   NZ_CP059233
Coordinates   2120257..2120598 (+) Length   113 a.a.
NCBI ID   WP_409039238.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0627     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2115257..2125598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS065_RS10810 (HS065_10720) rpsL 2115480..2115854 (-) 375 WP_240026932.1 30S ribosomal protein S12 -
  HS065_RS10815 (HS065_10725) rfaC 2115975..2116937 (-) 963 WP_409045692.1 lipopolysaccharide heptosyltransferase RfaC -
  HS065_RS10820 (HS065_10730) waaF 2117002..2118039 (-) 1038 WP_006250331.1 lipopolysaccharide heptosyltransferase II -
  HS065_RS10825 (HS065_10735) - 2118150..2118566 (-) 417 WP_409037003.1 MliC family protein -
  HS065_RS10830 (HS065_10740) - 2118630..2119964 (-) 1335 WP_409045693.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS065_RS10835 (HS065_10745) comEA/comE1 2120257..2120598 (+) 342 WP_409039238.1 ComEA family DNA-binding protein Machinery gene
  HS065_RS10840 (HS065_10750) asd 2120762..2121655 (+) 894 WP_006250004.1 archaetidylserine decarboxylase -
  HS065_RS10845 (HS065_10755) hsdR 2121727..2124078 (+) 2352 WP_409038047.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  HS065_RS10850 (HS065_10760) - 2124126..2125598 (+) 1473 WP_409045694.1 N-6 DNA methylase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12221.51 Da        Isoelectric Point: 9.7700

>NTDB_id=467881 HS065_RS10835 WP_409039238.1 2120257..2120598(+) (comEA/comE1) [Mannheimia haemolytica strain 0627]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQXKAQAIVDYRT
KNGNFKNIEQLAXEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=467881 HS065_RS10835 WP_409039238.1 2120257..2120598(+) (comEA/comE1) [Mannheimia haemolytica strain 0627]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAANAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTNNGGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCG
AGCCAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.895

100

0.584
  comE1/comEA Haemophilus influenzae Rd KW20

51.087

81.416

0.416
  comEA Vibrio cholerae C6706

52.874

76.991

0.407
  comEA Vibrio cholerae strain A1552

52.874

76.991

0.407