Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HS066_RS07925 Genome accession   NZ_CP059232
Coordinates   1517417..1518613 (-) Length   398 a.a.
NCBI ID   WP_409041649.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0634     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1512417..1523613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS066_RS07900 (HS066_07820) lptE 1514329..1514847 (+) 519 WP_409037689.1 LPS assembly lipoprotein LptE -
  HS066_RS07905 (HS066_07825) holA 1514890..1515915 (+) 1026 WP_240026304.1 DNA polymerase III subunit delta -
  HS066_RS07910 (HS066_07830) yacG 1515916..1516101 (-) 186 WP_006248406.1 DNA gyrase inhibitor YacG -
  HS066_RS07915 (HS066_07835) coaE 1516083..1516721 (-) 639 WP_409045446.1 dephospho-CoA kinase -
  HS066_RS07920 (HS066_07840) - 1516932..1517414 (-) 483 Protein_1541 peptidase A24 -
  HS066_RS07925 (HS066_07845) pilC 1517417..1518613 (-) 1197 WP_409041649.1 type II secretion system F family protein Machinery gene
  HS066_RS07930 (HS066_07850) - 1518619..1519062 (-) 444 Protein_1543 pilus assembly protein PilB -
  HS066_RS07935 (HS066_07855) pilA 1519083..1519490 (-) 408 WP_240020848.1 pilin Machinery gene
  HS066_RS07940 (HS066_07860) radA 1519741..1521120 (+) 1380 WP_240025849.1 DNA repair protein RadA -
  HS066_RS07945 (HS066_07865) - 1521175..1521405 (-) 231 WP_006248398.1 YgjV family protein -
  HS066_RS07950 (HS066_07870) - 1521524..1522018 (-) 495 WP_240018338.1 dihydrofolate reductase -
  HS066_RS07955 (HS066_07875) proB 1522130..1523215 (+) 1086 WP_240025850.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45158.46 Da        Isoelectric Point: 9.4698

>NTDB_id=467853 HS066_RS07925 WP_409041649.1 1517417..1518613(-) (pilC) [Mannheimia haemolytica strain 0634]
MTKIYEFHWQAQSRFGQKQRGKRLATNRDMLENLLLAQGYQHIRISRNFVLSANPKKEEVNSLLSQLALLVNSAMPLKQA
LSMLLQNCRNIRLYLWLNELIQHIESGYAFSQSLEKLGEFVTNQEIQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVK
KILFYPVIVLLISLALSIGLLVLIVPQFAQLYGSKDKTLPLITDILFTLSECLIEQGTVLLGTLLLAVIFYLFXAKKSRL
VAKWKMALWAKMPLFSRIIEQSRIIFFSQNIALMLNAHIPLDVALRSFLSEKNDDPILQQEIGTMLNLLQQGYKFSQGIN
PNVFGAEMAQMLEVGEKSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLIMGVIVGTIIVGLYLPIFDMGALVE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=467853 HS066_RS07925 WP_409041649.1 1517417..1518613(-) (pilC) [Mannheimia haemolytica strain 0634]
ATGACGAAAATCTATGAATTTCATTGGCAAGCCCAGAGCCGATTTGGGCAAAAACAGCGGGGCAAGCGGTTGGCAACGAA
TCGAGACATGTTGGAAAACCTTTTGCTGGCACAAGGTTATCAGCATATTCGGATTAGCCGAAATTTTGTGCTTTCAGCAA
ACCCGAAAAAAGAAGAGGTGAATAGCTTGCTATCACAGCTTGCATTGTTGGTTAATTCTGCCATGCCGTTAAAACAGGCA
TTATCTATGTTGTTGCAAAACTGCCGAAATATCCGCCTTTATCTATGGCTTAATGAGCTGATTCAGCATATTGAAAGTGG
CTATGCTTTTTCACAATCGTTGGAGAAATTGGGTGAATTTGTGACCAATCAGGAAATTCAGCTAATCAAAATGGGCGAAC
AAAGCGGAAAACTGGGCATTATGCTGACTAATTTAGCTGAAAGCCGAGCGAAATTGGAAAAATTGGCGAAAAAAGTGAAG
AAAATCCTGTTTTACCCGGTGATTGTGTTGCTGATTTCGCTCGCTTTATCTATCGGGCTATTGGTTTTGATTGTACCGCA
GTTTGCCCAACTTTATGGCTCAAAAGACAAAACTTTACCCCTCATTACCGATATTTTATTTACCCTTTCCGAATGCTTGA
TTGAGCAAGGCACAGTATTACTTGGCACGTTACTACTAGCGGTCATTTTTTACCTGTTTNTTGCAAAAAAGAGCAGGTTA
GTCGCAAAGTGGAAAATGGCTCTATGGGCTAAAATGCCACTGTTTAGCCGAATTATTGAGCAATCTCGCATTATCTTTTT
CAGCCAAAATATTGCCTTAATGCTGAATGCTCATATTCCGCTTGATGTTGCCTTGAGGTCGTTTTTATCCGAGAAAAATG
ATGACCCGATTTTACAGCAAGAAATTGGCACTATGCTTAATTTGTTACAACAAGGCTACAAATTTTCACAAGGGATCAAC
CCGAATGTGTTTGGTGCTGAGATGGCACAAATGCTTGAGGTTGGGGAGAAAAGTGGCAATGTGGCGAAAATGTGTGAGCA
TATTAGTGAGATGTACCAACAAAAATTAGATTACCAAATTGATATTTTGTCTCAGCTATTAGAACCGATGCTAATGTTGA
TAATGGGCGTGATTGTCGGCACTATTATTGTTGGGCTGTATTTACCGATTTTTGATATGGGGGCTTTGGTGGAGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

54

100

0.543
  pilC Haemophilus influenzae Rd KW20

42.145

100

0.425
  pilC Haemophilus influenzae 86-028NP

41.147

100

0.415