Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS066_RS00750 Genome accession   NZ_CP059232
Coordinates   145396..145737 (-) Length   113 a.a.
NCBI ID   WP_409038628.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0634     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 140396..150737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS066_RS00740 (HS066_00740) hsdR 141910..144264 (-) 2355 WP_409045223.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  HS066_RS00745 (HS066_00745) asd 144336..145232 (-) 897 WP_409039239.1 archaetidylserine decarboxylase -
  HS066_RS00750 (HS066_00750) comEA/comE1 145396..145737 (-) 342 WP_409038628.1 ComEA family DNA-binding protein Machinery gene
  HS066_RS00755 (HS066_00755) - 146030..147364 (+) 1335 WP_409038045.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS066_RS00760 (HS066_00760) - 147428..147844 (+) 417 WP_240024996.1 MliC family protein -
  HS066_RS00765 (HS066_00765) waaF 147954..148991 (+) 1038 WP_409041260.1 lipopolysaccharide heptosyltransferase II -
  HS066_RS00770 (HS066_00770) rfaC 149057..150016 (+) 960 WP_240024997.1 lipopolysaccharide heptosyltransferase RfaC -
  HS066_RS00775 (HS066_00775) rpsL 150137..150511 (+) 375 WP_240024998.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12230.80 Da        Isoelectric Point: 10.0993

>NTDB_id=467842 HS066_RS00750 WP_409038628.1 145396..145737(-) (comEA/comE1) [Mannheimia haemolytica strain 0634]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAXEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=467842 HS066_RS00750 WP_409038628.1 145396..145737(-) (comEA/comE1) [Mannheimia haemolytica strain 0634]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGNNGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCG
AGCCAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

100

0.593
  comE1/comEA Haemophilus influenzae Rd KW20

52.174

81.416

0.425
  comEA Vibrio cholerae C6706

54.023

76.991

0.416
  comEA Vibrio cholerae strain A1552

54.023

76.991

0.416