Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS071_RS12790 Genome accession   NZ_CP059228
Coordinates   2487612..2487953 (+) Length   113 a.a.
NCBI ID   WP_409039238.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0715     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2482612..2492953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS071_RS12765 (HS071_12645) rpsL 2482831..2483205 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  HS071_RS12770 (HS071_12650) rfaC 2483326..2484285 (-) 960 WP_240017636.1 lipopolysaccharide heptosyltransferase RfaC -
  HS071_RS12775 (HS071_12655) waaF 2484351..2485391 (-) 1041 WP_409038044.1 lipopolysaccharide heptosyltransferase II -
  HS071_RS12780 (HS071_12660) - 2485502..2485918 (-) 417 WP_409037003.1 MliC family protein -
  HS071_RS12785 - 2485982..2486338 (-) 357 WP_339328303.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS071_RS12790 (HS071_12670) comEA/comE1 2487612..2487953 (+) 342 WP_409039238.1 ComEA family DNA-binding protein Machinery gene
  HS071_RS12795 (HS071_12675) asd 2488117..2489013 (+) 897 WP_409039239.1 archaetidylserine decarboxylase -
  HS071_RS12800 (HS071_12680) hsdR 2489085..2491442 (+) 2358 WP_409042360.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12221.51 Da        Isoelectric Point: 9.7700

>NTDB_id=467838 HS071_RS12790 WP_409039238.1 2487612..2487953(+) (comEA/comE1) [Mannheimia haemolytica strain 0715]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQXKAQAIVDYRT
KNGNFKNIEQLAXEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=467838 HS071_RS12790 WP_409039238.1 2487612..2487953(+) (comEA/comE1) [Mannheimia haemolytica strain 0715]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAANAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTNNTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCG
AGCCAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.895

100

0.584
  comE1/comEA Haemophilus influenzae Rd KW20

51.087

81.416

0.416
  comEA Vibrio cholerae C6706

52.874

76.991

0.407
  comEA Vibrio cholerae strain A1552

52.874

76.991

0.407