Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HS071_RS00175 Genome accession   NZ_CP059228
Coordinates   32879..34030 (-) Length   383 a.a.
NCBI ID   WP_409042398.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0715     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 27879..39030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS071_RS00145 (HS071_00145) rplK 28133..28561 (-) 429 WP_006248758.1 50S ribosomal protein L11 -
  HS071_RS00150 (HS071_00150) nusG 28794..29357 (-) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  HS071_RS00155 (HS071_00155) secE 29359..29781 (-) 423 WP_409042396.1 preprotein translocase subunit SecE -
  HS071_RS00160 (HS071_00160) - 29894..30919 (-) 1026 WP_409042397.1 LacI family DNA-binding transcriptional regulator -
  HS071_RS00165 (HS071_00165) - 31150..31419 (+) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  HS071_RS00170 (HS071_00170) - 31432..32784 (+) 1353 WP_409038108.1 PTS ascorbate transporter subunit IIC -
  HS071_RS00175 (HS071_00175) dprA 32879..34030 (-) 1152 WP_409042398.1 DNA-processing protein DprA Machinery gene
  HS071_RS00180 (HS071_00180) def 34118..34630 (+) 513 WP_006248765.1 peptide deformylase -
  HS071_RS00185 (HS071_00185) rfaD 34723..35652 (+) 930 WP_240020345.1 ADP-glyceromanno-heptose 6-epimerase -
  HS071_RS00190 (HS071_00190) fabA 35720..36250 (-) 531 WP_240020346.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  HS071_RS00195 (HS071_00195) - 36364..38001 (-) 1638 WP_006248768.1 AAA family ATPase -
  HS071_RS00200 (HS071_00200) matP 38094..38546 (+) 453 WP_409042399.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 42678.55 Da        Isoelectric Point: 5.2272

>NTDB_id=467818 HS071_RS00175 WP_409042398.1 32879..34030(-) (dprA) [Mannheimia haemolytica strain 0715]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLF
DENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQKIVM
EQGITIAVLXGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITA
RYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAK
NLPSLTACQQQIYQHISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGXYVMDNGY

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=467818 HS071_RS00175 WP_409042398.1 32879..34030(-) (dprA) [Mannheimia haemolytica strain 0715]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGTTTAATCCTGATCAAAAGTGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTCTTT
GATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAGCCT
TTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTGCCG
AATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCAAAAAATCGTTATG
GAACAAGGCATAACGATTGCCGTGTTAGNNGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGA
ACAAATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTCGCCTAATCAGCCGCCGGTGGCAGAAAATTTTCCTCGTC
GTAATCGAATTATTAGTGGCTTATCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGTTCACTGATTACCGCT
CGTTATGCCCTTGAACAAGGTAGGGAAGTGTTTGCGTTACCGAATGCGGTACAAAACCCTTACGCACAAGGTTGCCACAA
GCTAATTAAAGAAGGGGCATTGCTCGTGGAAGGTGTGGAAGATATTTTAGAGGTGGTCGCCTCGCAATATCAACCTCAGC
AAATCCCTTTGTTTGATGAGTCTAAGCCAACAGTAAGCACATCTTTACAAGCGGTCAAAAACAGCGAAAAATTCGCAAAA
AATCTGCCAAGTCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCGATGGCAATTGATGATTTAGC
CAAAGTTACGGAGTTGACGATTGAAATATTGCTGGTTGAATTACTGGGTCTGGAATTAGCCGGTGTGATTAAACAAGTGA
GTGGGNGGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-375)

DNA recombination-mediator protein A (DNA_processg_A)

(73-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.158

99.217

0.726
  dprA Haemophilus influenzae Rd KW20

51.156

90.339

0.462
  dprA Vibrio campbellii strain DS40M4

44.355

97.128

0.431
  dprA Vibrio cholerae strain A1552

42.204

97.128

0.41
  dprA Legionella pneumophila strain ERS1305867

39.884

90.339

0.36