Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HS072_RS12815 | Genome accession | NZ_CP059227 |
| Coordinates | 2562525..2562977 (-) | Length | 150 a.a. |
| NCBI ID | WP_240028892.1 | Uniprot ID | - |
| Organism | Mannheimia haemolytica strain 0731 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2555925..2593823 | 2562525..2562977 | within | 0 |
Gene organization within MGE regions
Location: 2555925..2593823
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HS072_RS12765 (HS072_12715) | - | 2555925..2556221 (-) | 297 | WP_006248148.1 | Bor family protein | - |
| HS072_RS12770 (HS072_12720) | - | 2556246..2556527 (-) | 282 | WP_409044144.1 | Bor family protein | - |
| HS072_RS12775 (HS072_12725) | - | 2556686..2558665 (+) | 1980 | WP_409044145.1 | exoribonuclease II | - |
| HS072_RS12780 (HS072_12730) | apaH | 2558757..2559557 (+) | 801 | WP_006248152.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH | - |
| HS072_RS12790 (HS072_12740) | - | 2559925..2560923 (+) | 999 | WP_006248153.1 | site-specific integrase | - |
| HS072_RS12795 (HS072_12745) | - | 2561203..2561388 (+) | 186 | WP_409041573.1 | ribbon-helix-helix protein, CopG family | - |
| HS072_RS12800 (HS072_12750) | - | 2561658..2561948 (-) | 291 | WP_240025721.1 | hypothetical protein | - |
| HS072_RS12805 (HS072_12755) | - | 2561923..2562192 (-) | 270 | WP_006248156.1 | hypothetical protein | - |
| HS072_RS12810 (HS072_12760) | - | 2562182..2562514 (-) | 333 | WP_006248157.1 | DUF6378 domain-containing protein | - |
| HS072_RS12815 (HS072_12765) | ssb | 2562525..2562977 (-) | 453 | WP_240028892.1 | single-stranded DNA-binding protein | Machinery gene |
| HS072_RS12820 (HS072_12770) | - | 2562977..2563309 (-) | 333 | WP_006248159.1 | hypothetical protein | - |
| HS072_RS12825 (HS072_12775) | - | 2563322..2565688 (-) | 2367 | WP_409044146.1 | replication endonuclease | - |
| HS072_RS12830 (HS072_12780) | - | 2565685..2566017 (-) | 333 | WP_006248161.1 | hypothetical protein | - |
| HS072_RS12835 (HS072_12785) | - | 2566014..2566256 (-) | 243 | WP_006248162.1 | hypothetical protein | - |
| HS072_RS12840 | - | 2566268..2566396 (-) | 129 | WP_006248163.1 | hypothetical protein | - |
| HS072_RS12845 (HS072_12790) | - | 2566408..2566701 (-) | 294 | WP_240025725.1 | hypothetical protein | - |
| HS072_RS12850 (HS072_12795) | - | 2566714..2567046 (-) | 333 | WP_006248165.1 | hypothetical protein | - |
| HS072_RS12855 (HS072_12800) | - | 2567129..2567401 (-) | 273 | WP_006248166.1 | hypothetical protein | - |
| HS072_RS12860 (HS072_12805) | - | 2567534..2567782 (+) | 249 | WP_240025729.1 | hypothetical protein | - |
| HS072_RS12865 | - | 2567881..2568093 (-) | 213 | Protein_2489 | helix-turn-helix domain-containing protein | - |
| HS072_RS12870 (HS072_12810) | - | 2568217..2568903 (+) | 687 | WP_006248169.1 | S24 family peptidase | - |
| HS072_RS12875 (HS072_12815) | - | 2568907..2569425 (+) | 519 | WP_006248170.1 | BRCT domain-containing protein | - |
| HS072_RS12880 (HS072_12820) | - | 2569524..2569853 (+) | 330 | WP_240025733.1 | hypothetical protein | - |
| HS072_RS12885 (HS072_12825) | - | 2569952..2570230 (+) | 279 | WP_240019536.1 | excalibur calcium-binding domain-containing protein | - |
| HS072_RS12890 (HS072_12830) | - | 2570246..2571055 (+) | 810 | WP_409044147.1 | DUF3800 domain-containing protein | - |
| HS072_RS12895 (HS072_12835) | - | 2571238..2572476 (-) | 1239 | WP_409044148.1 | phage late control D family protein | - |
| HS072_RS12900 (HS072_12840) | - | 2572476..2572913 (-) | 438 | WP_240025739.1 | phage tail protein | - |
| HS072_RS12905 (HS072_12845) | - | 2572915..2573262 (-) | 348 | WP_409042830.1 | hypothetical protein | - |
| HS072_RS12910 (HS072_12850) | - | 2573326..2573466 (-) | 141 | WP_353085699.1 | GpE family phage tail protein | - |
| HS072_RS12915 (HS072_12855) | - | 2573466..2573780 (-) | 315 | WP_006248177.1 | phage tail assembly protein | - |
| HS072_RS12920 (HS072_12860) | - | 2573859..2574365 (-) | 507 | WP_240025741.1 | phage major tail tube protein | - |
| HS072_RS12925 (HS072_12865) | - | 2574374..2575555 (-) | 1182 | WP_006248179.1 | phage tail sheath protein | - |
| HS072_RS12930 (HS072_12870) | - | 2575755..2575973 (-) | 219 | WP_180372494.1 | hypothetical protein | - |
| HS072_RS12935 (HS072_12875) | - | 2575963..2576208 (-) | 246 | WP_409044149.1 | hypothetical protein | - |
| HS072_RS12940 (HS072_12880) | - | 2576209..2578488 (-) | 2280 | WP_409041578.1 | phage tail protein | - |
| HS072_RS12945 (HS072_12885) | - | 2578491..2579122 (-) | 632 | Protein_2505 | phage tail protein I | - |
| HS072_RS12950 (HS072_12890) | - | 2579109..2580026 (-) | 918 | WP_409044150.1 | baseplate assembly protein | - |
| HS072_RS12955 (HS072_12895) | - | 2580023..2580358 (-) | 336 | WP_006248187.1 | GPW/gp25 family protein | - |
| HS072_RS12960 (HS072_12900) | - | 2580358..2580963 (-) | 606 | WP_409044151.1 | phage baseplate assembly protein V | - |
| HS072_RS12965 (HS072_12905) | - | 2581092..2581379 (-) | 288 | WP_006250779.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HS072_RS12970 (HS072_12910) | - | 2581404..2581547 (-) | 144 | WP_409036608.1 | hypothetical protein | - |
| HS072_RS12975 (HS072_12915) | - | 2581612..2584524 (-) | 2913 | WP_409044152.1 | tape measure protein | - |
| HS072_RS12980 (HS072_12920) | - | 2584563..2584841 (+) | 279 | WP_006248191.1 | hypothetical protein | - |
| HS072_RS12985 (HS072_12925) | - | 2584891..2585349 (-) | 459 | WP_006248192.1 | phage virion morphogenesis protein | - |
| HS072_RS12990 (HS072_12930) | - | 2585342..2585827 (-) | 486 | WP_006248193.1 | phage tail protein | - |
| HS072_RS12995 (HS072_12935) | - | 2585824..2586045 (-) | 222 | WP_006248194.1 | TraR/DksA family transcriptional regulator | - |
| HS072_RS13000 | lysC | 2586070..2586300 (-) | 231 | WP_353080625.1 | Rz1-like lysis system protein LysC | - |
| HS072_RS13005 (HS072_12940) | - | 2586194..2586649 (-) | 456 | WP_006248210.1 | hypothetical protein | - |
| HS072_RS13010 (HS072_12945) | - | 2586646..2587212 (-) | 567 | WP_006250773.1 | lysozyme | - |
| HS072_RS13015 (HS072_12950) | - | 2587205..2587409 (-) | 205 | Protein_2519 | HP1 family phage holin | - |
| HS072_RS13020 (HS072_12955) | - | 2587415..2587627 (-) | 213 | WP_006250771.1 | tail protein X | - |
| HS072_RS13025 (HS072_12960) | - | 2587624..2588139 (-) | 516 | WP_006248195.1 | head completion/stabilization protein | - |
| HS072_RS13030 (HS072_12965) | - | 2588251..2588940 (-) | 690 | WP_240025749.1 | terminase endonuclease subunit | - |
| HS072_RS13035 (HS072_12970) | - | 2588950..2589978 (-) | 1029 | WP_006248197.1 | phage major capsid protein, P2 family | - |
| HS072_RS13040 (HS072_12975) | - | 2589992..2590819 (-) | 828 | WP_006248198.1 | GPO family capsid scaffolding protein | - |
| HS072_RS13045 (HS072_12980) | - | 2590969..2592774 (+) | 1806 | WP_409044492.1 | terminase ATPase subunit family protein | - |
| HS072_RS13050 (HS072_12985) | - | 2592783..2593823 (+) | 1041 | WP_409044153.1 | phage portal protein | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 16984.01 Da Isoelectric Point: 7.2060
>NTDB_id=467816 HS072_RS12815 WP_240028892.1 2562525..2562977(-) (ssb) [Mannheimia haemolytica strain 0731]
MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVKKESTEWHRVVLYRRLAEIAELYVXKGHLVSIIGKIK
TRKWTDSNGVERSITEIIAEQMQMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF
MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVKKESTEWHRVVLYRRLAEIAELYVXKGHLVSIIGKIK
TRKWTDSNGVERSITEIIAEQMQMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=467816 HS072_RS12815 WP_240028892.1 2562525..2562977(-) (ssb) [Mannheimia haemolytica strain 0731]
ATGAACTTAGTCACATTAGTCGGACGTTTGGGGCAAGACCCTGATATTAGAACAATGCAAAATGGTGAGAAAGCTGCGGC
TTTATCGGTAGCGACCTCTGAAAAGTGGACAGATAAGCAAACAGGTGTGAAGAAAGAAAGCACCGAATGGCATAGGGTGG
TGCTTTATCGCCGATTAGCTGAAATCGCCGAATTGTATGTANAAAAAGGGCATTTGGTATCAATTATCGGGAAAATTAAA
ACCCGAAAATGGACGGATAGCAACGGTGTTGAGCGGAGTATTACAGAGATTATTGCCGAGCAGATGCAAATGCTCAGTAG
TGGTGAGAAAAATACGCCAAATACGCCAAATAAGGCAGAAAATAAACCGCAACCAAAGCAGAAAAATCAAGACGTGATGA
CTGCGGACGAGCAGAAAGATATTCCGCAGTTTGATGATGATATTCCGTTTTAG
ATGAACTTAGTCACATTAGTCGGACGTTTGGGGCAAGACCCTGATATTAGAACAATGCAAAATGGTGAGAAAGCTGCGGC
TTTATCGGTAGCGACCTCTGAAAAGTGGACAGATAAGCAAACAGGTGTGAAGAAAGAAAGCACCGAATGGCATAGGGTGG
TGCTTTATCGCCGATTAGCTGAAATCGCCGAATTGTATGTANAAAAAGGGCATTTGGTATCAATTATCGGGAAAATTAAA
ACCCGAAAATGGACGGATAGCAACGGTGTTGAGCGGAGTATTACAGAGATTATTGCCGAGCAGATGCAAATGCTCAGTAG
TGGTGAGAAAAATACGCCAAATACGCCAAATAAGGCAGAAAATAAACCGCAACCAAAGCAGAAAAATCAAGACGTGATGA
CTGCGGACGAGCAGAAAGATATTCCGCAGTTTGATGATGATATTCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
44.199 |
100 |
0.533 |
| ssb | Vibrio cholerae strain A1552 |
41.279 |
100 |
0.473 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.44 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.44 |