Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS072_RS07230 Genome accession   NZ_CP059227
Coordinates   1452881..1453222 (-) Length   113 a.a.
NCBI ID   WP_409043908.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0731     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447881..1458222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS072_RS07215 (HS072_07215) - 1447883..1449352 (-) 1470 WP_240024991.1 class I SAM-dependent DNA methyltransferase -
  HS072_RS07220 (HS072_07220) hsdR 1449400..1451751 (-) 2352 WP_409043907.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  HS072_RS07225 (HS072_07225) asd 1451823..1452716 (-) 894 Protein_1392 archaetidylserine decarboxylase -
  HS072_RS07230 (HS072_07230) comEA/comE1 1452881..1453222 (-) 342 WP_409043908.1 ComEA family DNA-binding protein Machinery gene
  HS072_RS07235 - 1454493..1454849 (+) 357 WP_339328303.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS072_RS07240 (HS072_07240) - 1454914..1455330 (+) 417 WP_240024996.1 MliC family protein -
  HS072_RS07245 (HS072_07245) waaF 1455440..1456477 (+) 1038 WP_006250331.1 lipopolysaccharide heptosyltransferase II -
  HS072_RS07250 (HS072_07250) rfaC 1456542..1457501 (+) 960 WP_240028465.1 lipopolysaccharide heptosyltransferase RfaC -
  HS072_RS07255 (HS072_07255) rpsL 1457622..1457996 (+) 375 WP_240024998.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12221.51 Da        Isoelectric Point: 9.7700

>NTDB_id=467807 HS072_RS07230 WP_409043908.1 1452881..1453222(-) (comEA/comE1) [Mannheimia haemolytica strain 0731]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAXEVSGIGQATVEXNRANIILE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=467807 HS072_RS07230 WP_409043908.1 1452881..1453222(-) (comEA/comE1) [Mannheimia haemolytica strain 0731]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGNNGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAANAAAATCG
AGCCAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.895

100

0.584
  comE1/comEA Haemophilus influenzae Rd KW20

51.087

81.416

0.416
  comEA Vibrio cholerae C6706

54.023

76.991

0.416
  comEA Vibrio cholerae strain A1552

54.023

76.991

0.416