Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HS072_RS05875 Genome accession   NZ_CP059227
Coordinates   1179639..1180787 (+) Length   382 a.a.
NCBI ID   WP_240024879.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0731     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1174639..1185787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS072_RS05850 (HS072_05860) matP 1175127..1175573 (-) 447 Protein_1138 macrodomain Ter protein MatP -
  HS072_RS05855 (HS072_05865) - 1175666..1177303 (+) 1638 WP_006248768.1 AAA family ATPase -
  HS072_RS05860 (HS072_05870) fabA 1177417..1177947 (+) 531 WP_240017519.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  HS072_RS05865 (HS072_05875) rfaD 1178015..1178944 (-) 930 WP_240020345.1 ADP-glyceromanno-heptose 6-epimerase -
  HS072_RS05870 (HS072_05880) def 1179038..1179550 (-) 513 WP_006248765.1 peptide deformylase -
  HS072_RS05875 (HS072_05885) dprA 1179639..1180787 (+) 1149 WP_240024879.1 DNA-processing protein DprA Machinery gene
  HS072_RS05880 (HS072_05890) - 1180882..1182234 (-) 1353 WP_409038108.1 PTS ascorbate transporter subunit IIC -
  HS072_RS05885 (HS072_05895) - 1182247..1182516 (-) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  HS072_RS05890 (HS072_05900) - 1182747..1183772 (+) 1026 WP_240024881.1 LacI family DNA-binding transcriptional regulator -
  HS072_RS05895 (HS072_05905) secE 1183885..1184301 (+) 417 WP_409043229.1 preprotein translocase subunit SecE -
  HS072_RS05900 (HS072_05910) nusG 1184303..1184866 (+) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  HS072_RS05905 (HS072_05915) rplK 1185099..1185527 (+) 429 WP_240021374.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42488.58 Da        Isoelectric Point: 5.2272

>NTDB_id=467804 HS072_RS05875 WP_240024879.1 1179639..1180787(+) (dprA) [Mannheimia haemolytica strain 0731]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLF
DENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHXKIVM
EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITAR
YALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAKN
LPSLTACQQQIYQHISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=467804 HS072_RS05875 WP_240024879.1 1179639..1180787(+) (dprA) [Mannheimia haemolytica strain 0731]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGTTTAATCCTGATCAAAAGTGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTCTTT
GATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAGCCT
TTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTGCCG
AATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCANAAAATCGTTATG
GAACAAGGCATAACGATTGCCGTGTTAGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGAACA
AATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTCGCCTAATCAGCCGCCGGTGGCAGAAAATTTTCCTCGTCGTA
ATCGAATTATTAGTGGCTTATCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGTTCACTGATTACCGCTCGT
TATGCCCTTGAACAAGGTAGGGAAGTGTTTGCGTTACCGAATGCGGTACAAAACCCTTACGCACAAGGTTGCCACAAGCT
AATTAAAGAAGGGGCATTGCTCGTGGAAGGTGTGGAAGATATTTTAGAGGTGGTCGCCTCGCAATATCAACCTCAGCAAA
TCCCTTTGTTTGATGAGTCTAAGCCAACAGTAAGCACATCTTTACAAGCGGTCAAAAACAGCGAAAAATTCGCNAAAAAT
CTGCCAAGTCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCGATGGCAATTGATGATTTAGCCAA
AGTTACGGAGTTGACGATTGAAATATTGCTGGTTGAATTACTGGGTCTGGAATTAGCCGGTGTGATTAAACAAGTGAGTG
GGGGGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-375)

DNA recombination-mediator protein A (DNA_processg_A)

(73-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.351

99.215

0.728
  dprA Haemophilus influenzae Rd KW20

51.014

90.314

0.461
  dprA Vibrio campbellii strain DS40M4

44.744

97.12

0.435
  dprA Vibrio cholerae strain A1552

42.588

97.12

0.414
  dprA Legionella pneumophila strain ERS1305867

40.29

90.314

0.364