Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HS073_RS09910 | Genome accession | NZ_CP059226 |
| Coordinates | 1904553..1905005 (+) | Length | 150 a.a. |
| NCBI ID | WP_006248158.1 | Uniprot ID | A0A248ZZF8 |
| Organism | Mannheimia haemolytica strain 0739 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1873709..1917126 | 1904553..1905005 | within | 0 |
Gene organization within MGE regions
Location: 1873709..1917126
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HS073_RS09680 (HS073_09640) | - | 1873709..1874767 (-) | 1059 | WP_409036604.1 | phage portal protein | - |
| HS073_RS09685 (HS073_09645) | - | 1874760..1876562 (-) | 1803 | WP_409037369.1 | terminase ATPase subunit family protein | - |
| HS073_RS09690 (HS073_09650) | - | 1876712..1877539 (+) | 828 | WP_006248198.1 | GPO family capsid scaffolding protein | - |
| HS073_RS09695 (HS073_09655) | - | 1877553..1878581 (+) | 1029 | WP_240019527.1 | phage major capsid protein, P2 family | - |
| HS073_RS09700 (HS073_09660) | - | 1878591..1879280 (+) | 690 | WP_409036605.1 | terminase endonuclease subunit | - |
| HS073_RS09705 (HS073_09665) | - | 1879392..1879907 (+) | 516 | WP_006248195.1 | head completion/stabilization protein | - |
| HS073_RS09710 (HS073_09670) | - | 1879904..1880116 (+) | 213 | WP_006250771.1 | tail protein X | - |
| HS073_RS09715 (HS073_09675) | - | 1880122..1880326 (+) | 205 | Protein_1873 | HP1 family phage holin | - |
| HS073_RS09720 (HS073_09680) | - | 1880319..1880888 (+) | 570 | WP_409036606.1 | lysozyme | - |
| HS073_RS09725 (HS073_09685) | - | 1880885..1881340 (+) | 456 | WP_006248210.1 | hypothetical protein | - |
| HS073_RS09730 | lysC | 1881234..1881464 (+) | 231 | WP_353080625.1 | Rz1-like lysis system protein LysC | - |
| HS073_RS09735 (HS073_09690) | - | 1881489..1881710 (+) | 222 | WP_006248194.1 | TraR/DksA family transcriptional regulator | - |
| HS073_RS09740 (HS073_09695) | - | 1881707..1882192 (+) | 486 | WP_006248193.1 | phage tail protein | - |
| HS073_RS09745 (HS073_09700) | - | 1882185..1882643 (+) | 459 | WP_006248192.1 | phage virion morphogenesis protein | - |
| HS073_RS09750 (HS073_09705) | - | 1882694..1882972 (-) | 279 | WP_006248191.1 | hypothetical protein | - |
| HS073_RS09755 (HS073_09710) | - | 1883011..1885932 (+) | 2922 | WP_409036607.1 | tape measure protein | - |
| HS073_RS09760 (HS073_09715) | - | 1885997..1886140 (+) | 144 | WP_409036608.1 | hypothetical protein | - |
| HS073_RS09765 (HS073_09720) | - | 1886165..1886452 (+) | 288 | WP_006250779.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HS073_RS09770 (HS073_09725) | - | 1886582..1887187 (+) | 606 | WP_006248188.1 | phage baseplate assembly protein V | - |
| HS073_RS09775 (HS073_09730) | - | 1887187..1887522 (+) | 336 | WP_006248187.1 | GPW/gp25 family protein | - |
| HS073_RS09780 (HS073_09735) | - | 1887519..1888436 (+) | 918 | WP_006248186.1 | baseplate assembly protein | - |
| HS073_RS09785 (HS073_09740) | - | 1888423..1889054 (+) | 632 | Protein_1887 | phage tail protein I | - |
| HS073_RS09790 (HS073_09745) | - | 1889057..1891336 (+) | 2280 | WP_409036609.1 | phage tail protein | - |
| HS073_RS09795 (HS073_09750) | - | 1891337..1891579 (+) | 243 | WP_006248181.1 | hypothetical protein | - |
| HS073_RS09800 (HS073_09755) | - | 1891967..1893151 (+) | 1185 | WP_409036610.1 | phage tail sheath protein | - |
| HS073_RS09805 (HS073_09760) | - | 1893160..1893666 (+) | 507 | WP_409036611.1 | phage major tail tube protein | - |
| HS073_RS09810 (HS073_09765) | - | 1893745..1894062 (+) | 318 | WP_409036612.1 | phage tail assembly protein | - |
| HS073_RS09815 | - | 1894137..1894202 (+) | 66 | WP_347342218.1 | GpE family phage tail protein | - |
| HS073_RS09820 (HS073_09775) | - | 1894266..1894613 (+) | 348 | WP_006253663.1 | hypothetical protein | - |
| HS073_RS09825 (HS073_09780) | - | 1894615..1895052 (+) | 438 | WP_240019533.1 | phage tail protein | - |
| HS073_RS09830 (HS073_09785) | - | 1895052..1896290 (+) | 1239 | WP_409036613.1 | phage late control D family protein | - |
| HS073_RS09835 (HS073_09790) | - | 1896473..1897285 (-) | 813 | WP_409036614.1 | DUF3800 domain-containing protein | - |
| HS073_RS09840 (HS073_09795) | - | 1897298..1897579 (-) | 282 | WP_409036615.1 | excalibur calcium-binding domain-containing protein | - |
| HS073_RS09845 (HS073_09800) | - | 1897679..1898008 (-) | 330 | WP_006248171.1 | hypothetical protein | - |
| HS073_RS09850 (HS073_09805) | - | 1898107..1898625 (-) | 519 | WP_409036616.1 | BRCT domain-containing protein | - |
| HS073_RS09855 (HS073_09810) | - | 1898629..1899315 (-) | 687 | WP_006248169.1 | S24 family peptidase | - |
| HS073_RS09860 (HS073_09815) | - | 1899439..1899652 (+) | 214 | Protein_1902 | helix-turn-helix domain-containing protein | - |
| HS073_RS09865 (HS073_09820) | - | 1899751..1899999 (-) | 249 | WP_240019538.1 | hypothetical protein | - |
| HS073_RS09870 (HS073_09825) | - | 1900132..1900404 (+) | 273 | WP_006248166.1 | hypothetical protein | - |
| HS073_RS09875 (HS073_09830) | - | 1900487..1900819 (+) | 333 | WP_006248165.1 | hypothetical protein | - |
| HS073_RS09880 (HS073_09835) | - | 1900832..1901125 (+) | 294 | WP_240019539.1 | hypothetical protein | - |
| HS073_RS09885 | - | 1901137..1901265 (+) | 129 | WP_006248163.1 | hypothetical protein | - |
| HS073_RS09890 (HS073_09840) | - | 1901277..1901519 (+) | 243 | WP_006248162.1 | hypothetical protein | - |
| HS073_RS09895 (HS073_09845) | - | 1901516..1901788 (+) | 273 | WP_409036617.1 | hypothetical protein | - |
| HS073_RS09900 (HS073_09850) | - | 1901846..1904203 (+) | 2358 | WP_409036618.1 | replication endonuclease | - |
| HS073_RS09905 (HS073_09855) | - | 1904221..1904553 (+) | 333 | WP_006248159.1 | hypothetical protein | - |
| HS073_RS09910 (HS073_09860) | ssb | 1904553..1905005 (+) | 453 | WP_006248158.1 | single-stranded DNA-binding protein | Machinery gene |
| HS073_RS09915 (HS073_09865) | - | 1905016..1905348 (+) | 333 | WP_006248157.1 | DUF6378 domain-containing protein | - |
| HS073_RS09920 (HS073_09870) | - | 1905338..1905565 (+) | 228 | WP_409036619.1 | hypothetical protein | - |
| HS073_RS09925 (HS073_09875) | - | 1905583..1905873 (+) | 291 | WP_409036620.1 | hypothetical protein | - |
| HS073_RS09930 (HS073_09880) | - | 1906143..1906325 (-) | 183 | WP_006248154.1 | hypothetical protein | - |
| HS073_RS09935 (HS073_09885) | - | 1906605..1907606 (-) | 1002 | WP_409036621.1 | tyrosine-type recombinase/integrase | - |
| HS073_RS09945 (HS073_09895) | apaH | 1907973..1908773 (-) | 801 | WP_006248152.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH | - |
| HS073_RS09950 (HS073_09900) | - | 1908866..1910842 (-) | 1977 | WP_409036622.1 | exoribonuclease II | - |
| HS073_RS09955 (HS073_09905) | - | 1911002..1911280 (+) | 279 | WP_006248149.1 | Bor family protein | - |
| HS073_RS09960 (HS073_09910) | - | 1911305..1911601 (+) | 297 | WP_006248148.1 | Bor family protein | - |
| HS073_RS09965 (HS073_09915) | - | 1911653..1912450 (-) | 798 | WP_240019545.1 | enoyl-ACP reductase | - |
| HS073_RS09970 (HS073_09920) | - | 1912594..1913367 (-) | 774 | WP_006251533.1 | FNR family transcription factor | - |
| HS073_RS09975 (HS073_09925) | - | 1913598..1914023 (+) | 426 | WP_006248145.1 | universal stress protein | - |
| HS073_RS09980 (HS073_09930) | alaS | 1914218..1916851 (+) | 2634 | WP_409036623.1 | alanine--tRNA ligase | - |
| HS073_RS09985 (HS073_09935) | csrA | 1916941..1917126 (+) | 186 | WP_006248142.1 | carbon storage regulator CsrA | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 16993.30 Da Isoelectric Point: 8.4658
>NTDB_id=467788 HS073_RS09910 WP_006248158.1 1904553..1905005(+) (ssb) [Mannheimia haemolytica strain 0739]
MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVKKESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIK
TRKWTDSNGVERSITEIIAEQMQMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF
MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVKKESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIK
TRKWTDSNGVERSITEIIAEQMQMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=467788 HS073_RS09910 WP_006248158.1 1904553..1905005(+) (ssb) [Mannheimia haemolytica strain 0739]
ATGAACTTAGTCACATTAGTCGGACGTTTGGGGCAAGACCCTGATATTAGAACAATGCAAAATGGTGAGAAAGCTGCGGC
TTTATCGGTAGCGACCTCTGAAAAGTGGACAGATAAGCAAACAGGTGTGAAGAAAGAAAGCACCGAATGGCATAGGGTGG
TGCTTTATCGCCGATTAGCTGAAATCGCCGAATTGTATGTNAAAAAAGGGCATTTGGTATCAATTATCGGGAAAATTAAA
ACCCGAAAATGGACGGATAGCAACGGTGTTGAGCGGAGTATTACAGAGATTATTGCCGAGCAGATGCAAATGCTCAGTAG
TGGTGAGAAAAATACGCCAAATACGCCAAATAAGGCAGAAAATAAACCGCAACCAAAGCAGAAAAATCAAGACGTGATGA
CTGCGGACGAGCAGAAAGATATTCCGCAGTTTGATGATGATATTCCGTTTTAG
ATGAACTTAGTCACATTAGTCGGACGTTTGGGGCAAGACCCTGATATTAGAACAATGCAAAATGGTGAGAAAGCTGCGGC
TTTATCGGTAGCGACCTCTGAAAAGTGGACAGATAAGCAAACAGGTGTGAAGAAAGAAAGCACCGAATGGCATAGGGTGG
TGCTTTATCGCCGATTAGCTGAAATCGCCGAATTGTATGTNAAAAAAGGGCATTTGGTATCAATTATCGGGAAAATTAAA
ACCCGAAAATGGACGGATAGCAACGGTGTTGAGCGGAGTATTACAGAGATTATTGCCGAGCAGATGCAAATGCTCAGTAG
TGGTGAGAAAAATACGCCAAATACGCCAAATAAGGCAGAAAATAAACCGCAACCAAAGCAGAAAAATCAAGACGTGATGA
CTGCGGACGAGCAGAAAGATATTCCGCAGTTTGATGATGATATTCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
44.199 |
100 |
0.533 |
| ssb | Vibrio cholerae strain A1552 |
41.279 |
100 |
0.473 |
| ssb | Neisseria meningitidis MC58 |
38.728 |
100 |
0.447 |
| ssb | Neisseria gonorrhoeae MS11 |
38.728 |
100 |
0.447 |