Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HS073_RS08885 Genome accession   NZ_CP059226
Coordinates   1753120..1753578 (+) Length   152 a.a.
NCBI ID   WP_006248790.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0739     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1748120..1758578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS073_RS08840 (HS073_08810) - 1748362..1748586 (-) 225 WP_409036562.1 transcriptional regulator -
  HS073_RS08845 (HS073_08815) - 1748713..1749444 (+) 732 WP_006249426.1 S24 family peptidase -
  HS073_RS08850 (HS073_08820) - 1749449..1749952 (+) 504 WP_006249427.1 DUF4365 domain-containing protein -
  HS073_RS08855 (HS073_08825) - 1749949..1751061 (+) 1113 WP_409036563.1 hypothetical protein -
  HS073_RS08860 (HS073_08830) - 1751326..1751556 (+) 231 WP_015484163.1 hypothetical protein -
  HS073_RS08865 (HS073_08835) - 1752009..1752260 (+) 252 WP_006248786.1 hypothetical protein -
  HS073_RS08870 (HS073_08840) - 1752263..1752538 (-) 276 WP_006248787.1 hypothetical protein -
  HS073_RS08875 (HS073_08845) - 1752752..1752937 (+) 186 WP_006248788.1 hypothetical protein -
  HS073_RS08880 (HS073_08850) - 1752921..1753052 (+) 132 WP_275672141.1 hypothetical protein -
  HS073_RS08885 (HS073_08855) ssb 1753120..1753578 (+) 459 WP_006248790.1 single-stranded DNA-binding protein Machinery gene
  HS073_RS08890 (HS073_08860) - 1753614..1753973 (+) 360 WP_006248791.1 hypothetical protein -
  HS073_RS08895 (HS073_08865) - 1754043..1754849 (+) 807 WP_409036564.1 DUF2303 family protein -
  HS073_RS08900 (HS073_08870) - 1754958..1755476 (+) 519 WP_409036565.1 DUF551 domain-containing protein -
  HS073_RS08905 (HS073_08875) - 1755473..1755673 (+) 201 WP_006248794.1 hypothetical protein -
  HS073_RS08910 (HS073_08880) - 1755657..1756154 (+) 498 WP_006248795.1 MazG-like family protein -
  HS073_RS08915 (HS073_08885) - 1756158..1756346 (-) 189 WP_015484162.1 hypothetical protein -
  HS073_RS08920 (HS073_08890) - 1756477..1756854 (-) 378 WP_006248797.1 hypothetical protein -
  HS073_RS08925 (HS073_08895) - 1757084..1757926 (+) 843 WP_240028241.1 KilA-N domain-containing protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16841.68 Da        Isoelectric Point: 5.2222

>NTDB_id=467787 HS073_RS08885 WP_006248790.1 1753120..1753578(+) (ssb) [Mannheimia haemolytica strain 0739]
MAGINKVIIVGRLGNDPELRTMPNGDTTAKISVATSTEWTDKVSGDKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEG
KLRTRKWQAQDGTDRWTTEIIADQLQMLGSSSSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=467787 HS073_RS08885 WP_006248790.1 1753120..1753578(+) (ssb) [Mannheimia haemolytica strain 0739]
ATGGCAGGAATTAACAAAGTGATTATTGTCGGTCGCCTAGGTAACGACCCGGAATTGCGAACAATGCCAAACGGCGATAC
AACCGCCAAAATCAGCGTAGCAACTTCGACCGAATGGACAGATAAAGTATCAGGCGATAAAAAACAAGCCACAGAGTGGC
ATAGCATTATCGCCTTTCGGAATTTAGCTGACATTATTGGCAAATACCTGAAAAAAGGCTCACAAGTCTATGTTGAGGGC
AAACTACGTACTCGCAAATGGCAAGCCCAAGACGGCACAGACCGCTGGACGACTGAAATCATCGCTGATCAGCTACAAAT
GCTTGGTAGCTCAAGCAGCGGAAACAGCAATAATAATTGGGCAACCGAACCGGCAGGAAACCCACCGCCAACCAATCCAT
ATAACCACGTAATGACGGATTCAGAATCACGAGATTTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.592
  ssb Vibrio cholerae strain A1552

42.197

100

0.48
  ssb Neisseria meningitidis MC58

39.884

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.884

100

0.454