Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6J97_RS08770 Genome accession   NZ_CP069522
Coordinates   1864886..1866313 (-) Length   475 a.a.
NCBI ID   WP_001518725.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1267     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1859886..1871313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J97_RS08740 (I6J97_08740) yeeZ 1859941..1860765 (+) 825 WP_000754741.1 SDR family oxidoreductase -
  I6J97_RS08745 (I6J97_08745) yeeY 1860811..1861740 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  I6J97_RS08750 (I6J97_08750) yoeI 1861955..1862017 (+) 63 WP_010723108.1 membrane protein YoeI -
  I6J97_RS08755 (I6J97_08755) plaP 1862007..1863365 (+) 1359 WP_001518726.1 putrescine/proton symporter PlaP -
  I6J97_RS08760 (I6J97_08760) tsuA 1863544..1864602 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  I6J97_RS08765 (I6J97_08765) tsuB 1864616..1864843 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6J97_RS08770 (I6J97_08770) sbcB 1864886..1866313 (-) 1428 WP_001518725.1 exodeoxyribonuclease I Machinery gene
  I6J97_RS08775 (I6J97_08775) dacD 1866522..1867688 (+) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6J97_RS08780 (I6J97_08780) sbmC 1867807..1868280 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6J97_RS08785 (I6J97_08785) yeeA 1868478..1869536 (+) 1059 WP_001200894.1 FUSC family protein -
  I6J97_RS08790 (I6J97_08790) tmaR 1869708..1870037 (+) 330 WP_000450409.1 DUF496 family protein -
  I6J97_RS26985 (I6J97_08795) - 1870138..1870320 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6J97_RS26630 - 1870440..1870520 (+) 81 WP_023441679.1 hypothetical protein -
  I6J97_RS08805 (I6J97_08805) - 1870809..1870889 (-) 81 Protein_1747 hypothetical protein -
  I6J97_RS08810 (I6J97_08810) yeeW 1870935..1871129 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54427.72 Da        Isoelectric Point: 5.6054

>NTDB_id=467775 I6J97_RS08770 WP_001518725.1 1864886..1866313(-) (sbcB) [Escherichia coli strain FDAARGOS_1267]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=467775 I6J97_RS08770 WP_001518725.1 1864886..1866313(-) (sbcB) [Escherichia coli strain FDAARGOS_1267]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581