Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HS073_RS01480 Genome accession   NZ_CP059226
Coordinates   285952..286293 (+) Length   113 a.a.
NCBI ID   WP_409037004.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0739     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 280952..291293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS073_RS01455 (HS073_01450) rpsL 281176..281550 (-) 375 WP_409037001.1 30S ribosomal protein S12 -
  HS073_RS01460 (HS073_01455) rfaC 281671..282630 (-) 960 WP_240020234.1 lipopolysaccharide heptosyltransferase RfaC -
  HS073_RS01465 (HS073_01460) waaF 282696..283736 (-) 1041 WP_409037002.1 lipopolysaccharide heptosyltransferase II -
  HS073_RS01470 (HS073_01465) - 283846..284262 (-) 417 WP_409037003.1 MliC family protein -
  HS073_RS01475 - 284326..284682 (-) 357 WP_339328303.1 LysM-like peptidoglycan-binding domain-containing protein -
  HS073_RS01480 (HS073_01475) comEA/comE1 285952..286293 (+) 342 WP_409037004.1 ComEA family DNA-binding protein Machinery gene
  HS073_RS01485 (HS073_01480) asd 286456..287352 (+) 897 WP_409037005.1 archaetidylserine decarboxylase -
  HS073_RS01490 (HS073_01485) hsdR 287424..289781 (+) 2358 WP_409037006.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12212.22 Da        Isoelectric Point: 8.5970

>NTDB_id=467775 HS073_RS01480 WP_409037004.1 285952..286293(+) (comEA/comE1) [Mannheimia haemolytica strain 0739]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQXKAQAIVDYRT
XNGNFKNIEQLAXEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=467775 HS073_RS01480 WP_409037004.1 285952..286293(+) (comEA/comE1) [Mannheimia haemolytica strain 0739]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAANAAAGCTCAAGCGATTGTCGATTACCGTACT
AANAACGGCAATTTTAAAAACATTGAGCAACTTGCTNNTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCG
AGCCAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.018

100

0.575
  comEA Vibrio cholerae C6706

52.874

76.991

0.407
  comEA Vibrio cholerae strain A1552

52.874

76.991

0.407
  comE1/comEA Haemophilus influenzae Rd KW20

50

81.416

0.407