Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | H0I86_RS28265 | Genome accession | NZ_CP059162 |
| Coordinates | 6172398..6172910 (-) | Length | 170 a.a. |
| NCBI ID | WP_009045846.1 | Uniprot ID | A0AB33WX86 |
| Organism | Pseudomonas chlororaphis subsp. aurantiaca strain YS05 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 6169547..6193356 | 6172398..6172910 | within | 0 |
Gene organization within MGE regions
Location: 6169547..6193356
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0I86_RS28260 (H0I86_28260) | - | 6170935..6172326 (+) | 1392 | WP_180922990.1 | amidase | - |
| H0I86_RS28265 (H0I86_28265) | ssb | 6172398..6172910 (-) | 513 | WP_009045846.1 | single-stranded DNA-binding protein | Machinery gene |
| H0I86_RS28270 (H0I86_28270) | - | 6172920..6174314 (-) | 1395 | WP_124322534.1 | MFS transporter | - |
| H0I86_RS28275 (H0I86_28275) | uvrA | 6174495..6177329 (+) | 2835 | WP_180922991.1 | excinuclease ABC subunit UvrA | - |
| H0I86_RS28280 (H0I86_28280) | bfr | 6177420..6177884 (-) | 465 | WP_007924173.1 | bacterioferritin | - |
| H0I86_RS28285 (H0I86_28285) | - | 6178040..6179488 (-) | 1449 | WP_180922992.1 | catalase | - |
| H0I86_RS28290 (H0I86_28290) | rplQ | 6179660..6180046 (-) | 387 | WP_007924175.1 | 50S ribosomal protein L17 | - |
| H0I86_RS28295 (H0I86_28295) | rpoA | 6180089..6181090 (-) | 1002 | WP_007924176.1 | DNA-directed RNA polymerase subunit alpha | - |
| H0I86_RS28300 (H0I86_28300) | rpsD | 6181113..6181733 (-) | 621 | WP_003176404.1 | 30S ribosomal protein S4 | - |
| H0I86_RS28305 (H0I86_28305) | rpsK | 6181752..6182141 (-) | 390 | WP_007924177.1 | 30S ribosomal protein S11 | - |
| H0I86_RS28310 (H0I86_28310) | rpsM | 6182172..6182528 (-) | 357 | WP_009045849.1 | 30S ribosomal protein S13 | - |
| H0I86_RS28315 (H0I86_28315) | rpmJ | 6182659..6182775 (-) | 117 | WP_002555468.1 | 50S ribosomal protein L36 | - |
| H0I86_RS28320 (H0I86_28320) | secY | 6182800..6184128 (-) | 1329 | WP_007924182.1 | preprotein translocase subunit SecY | - |
| H0I86_RS28325 (H0I86_28325) | rplO | 6184129..6184563 (-) | 435 | WP_007924183.1 | 50S ribosomal protein L15 | - |
| H0I86_RS28330 (H0I86_28330) | rpmD | 6184567..6184743 (-) | 177 | WP_003176408.1 | 50S ribosomal protein L30 | - |
| H0I86_RS28335 (H0I86_28335) | rpsE | 6184746..6185246 (-) | 501 | WP_007924184.1 | 30S ribosomal protein S5 | - |
| H0I86_RS28340 (H0I86_28340) | rplR | 6185250..6185600 (-) | 351 | WP_003186037.1 | 50S ribosomal protein L18 | - |
| H0I86_RS28345 (H0I86_28345) | rplF | 6185611..6186144 (-) | 534 | WP_007924185.1 | 50S ribosomal protein L6 | - |
| H0I86_RS28350 (H0I86_28350) | rpsH | 6186157..6186549 (-) | 393 | WP_003228724.1 | 30S ribosomal protein S8 | - |
| H0I86_RS28355 (H0I86_28355) | rpsN | 6186758..6187063 (-) | 306 | WP_003228726.1 | 30S ribosomal protein S14 | - |
| H0I86_RS28360 (H0I86_28360) | rplE | 6187077..6187616 (-) | 540 | WP_007924186.1 | 50S ribosomal protein L5 | - |
| H0I86_RS28365 (H0I86_28365) | rplX | 6187637..6187951 (-) | 315 | WP_003186046.1 | 50S ribosomal protein L24 | - |
| H0I86_RS28370 (H0I86_28370) | rplN | 6187963..6188331 (-) | 369 | WP_002555479.1 | 50S ribosomal protein L14 | - |
| H0I86_RS28375 (H0I86_28375) | rpsQ | 6188355..6188621 (-) | 267 | WP_003194644.1 | 30S ribosomal protein S17 | - |
| H0I86_RS28380 (H0I86_28380) | rpmC | 6188624..6188815 (-) | 192 | WP_180922993.1 | 50S ribosomal protein L29 | - |
| H0I86_RS28385 (H0I86_28385) | rplP | 6188815..6189228 (-) | 414 | WP_003228729.1 | 50S ribosomal protein L16 | - |
| H0I86_RS28390 (H0I86_28390) | rpsC | 6189241..6189927 (-) | 687 | WP_007924192.1 | 30S ribosomal protein S3 | - |
| H0I86_RS28395 (H0I86_28395) | rplV | 6189941..6190273 (-) | 333 | WP_003103908.1 | 50S ribosomal protein L22 | - |
| H0I86_RS28400 (H0I86_28400) | rpsS | 6190287..6190562 (-) | 276 | WP_002555486.1 | 30S ribosomal protein S19 | - |
| H0I86_RS28405 (H0I86_28405) | rplB | 6190579..6191403 (-) | 825 | WP_007924198.1 | 50S ribosomal protein L2 | - |
| H0I86_RS28410 (H0I86_28410) | rplW | 6191418..6191717 (-) | 300 | WP_002555488.1 | 50S ribosomal protein L23 | - |
| H0I86_RS28415 (H0I86_28415) | rplD | 6191714..6192316 (-) | 603 | WP_007924200.1 | 50S ribosomal protein L4 | - |
| H0I86_RS28420 (H0I86_28420) | rplC | 6192329..6192964 (-) | 636 | WP_180922994.1 | 50S ribosomal protein L3 | - |
| H0I86_RS28425 (H0I86_28425) | rpsJ | 6193045..6193356 (-) | 312 | WP_003186070.1 | 30S ribosomal protein S10 | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18934.07 Da Isoelectric Point: 5.9455
>NTDB_id=467609 H0I86_RS28265 WP_009045846.1 6172398..6172910(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain YS05]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
Nucleotide
Download Length: 513 bp
>NTDB_id=467609 H0I86_RS28265 WP_009045846.1 6172398..6172910(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain YS05]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTTGATGACGATATCCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTTGATGACGATATCCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.427 |
100 |
0.612 |
| ssb | Glaesserella parasuis strain SC1401 |
46.392 |
100 |
0.529 |
| ssb | Neisseria meningitidis MC58 |
48.864 |
100 |
0.506 |
| ssb | Neisseria gonorrhoeae MS11 |
48.295 |
100 |
0.5 |