Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HTZ90_RS01535 Genome accession   NZ_CP059156
Coordinates   354928..355431 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain WKZ-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 355957..374996 354928..355431 flank 526


Gene organization within MGE regions


Location: 354928..374996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ90_RS01535 (HTZ90_000307) ssbA 354928..355431 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  HTZ90_RS01540 (HTZ90_000308) rpsR 355483..355725 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  HTZ90_RS01545 (HTZ90_000309) - 355957..356790 (-) 834 WP_180372434.1 type II toxin-antitoxin system PemK/MazF family toxin -
  HTZ90_RS01550 (HTZ90_000310) - 356791..358005 (-) 1215 WP_123090135.1 site-specific integrase -
  HTZ90_RS01555 (HTZ90_000311) - 358304..359038 (-) 735 WP_000142630.1 helix-turn-helix domain-containing protein -
  HTZ90_RS01560 (HTZ90_000312) - 359188..359400 (+) 213 WP_053040300.1 helix-turn-helix transcriptional regulator -
  HTZ90_RS01565 (HTZ90_000313) - 359401..359673 (+) 273 WP_053040301.1 helix-turn-helix domain-containing protein -
  HTZ90_RS01570 (HTZ90_000314) - 359685..359831 (+) 147 WP_000784885.1 hypothetical protein -
  HTZ90_RS01575 (HTZ90_000315) tscA 359824..360033 (+) 210 WP_001058492.1 type II toxin-antitoxin system antitoxin TscA -
  HTZ90_RS01580 (HTZ90_000316) tscT 360036..360356 (+) 321 WP_123090134.1 type II toxin-antitoxin system toxin TscT -
  HTZ90_RS01585 (HTZ90_000317) - 360420..361289 (+) 870 WP_053040303.1 primase alpha helix C-terminal domain-containing protein -
  HTZ90_RS01590 (HTZ90_000318) - 361306..362775 (+) 1470 WP_180821714.1 virulence-associated E family protein -
  HTZ90_RS01595 (HTZ90_000319) - 363054..363416 (+) 363 WP_001039165.1 hypothetical protein -
  HTZ90_RS01600 (HTZ90_000320) - 363409..363681 (+) 273 WP_000477476.1 hypothetical protein -
  HTZ90_RS01605 (HTZ90_000321) - 363683..364324 (+) 642 WP_160187057.1 pathogenicity island protein -
  HTZ90_RS01610 (HTZ90_000322) - 365032..365376 (+) 345 WP_001288442.1 hypothetical protein -
  HTZ90_RS01615 (HTZ90_000323) - 365407..366060 (+) 654 WP_000214170.1 hypothetical protein -
  HTZ90_RS01620 (HTZ90_000324) - 366113..366640 (+) 528 WP_000771361.1 spore coat protein -
  HTZ90_RS01625 (HTZ90_000325) - 366772..366984 (+) 213 WP_001656917.1 hypothetical protein -
  HTZ90_RS01630 (HTZ90_000326) - 366981..367550 (+) 570 WP_001293071.1 terminase small subunit -
  HTZ90_RS01635 (HTZ90_000327) - 367827..368795 (+) 969 WP_000801980.1 Abi family protein -
  HTZ90_RS01640 (HTZ90_000328) - 368937..369374 (+) 438 WP_073392942.1 DUF3102 domain-containing protein -
  HTZ90_RS01645 (HTZ90_000329) - 369492..370004 (+) 513 WP_000813311.1 hypothetical protein -
  HTZ90_RS14160 - 370020..370199 (+) 180 WP_000797954.1 hypothetical protein -
  HTZ90_RS01650 (HTZ90_000330) - 370963..371970 (-) 1008 WP_001080636.1 Abi family protein -
  HTZ90_RS01655 (HTZ90_000331) - 371976..372689 (-) 714 Protein_331 tyrosine-type recombinase/integrase -
  HTZ90_RS01660 (HTZ90_000332) - 372926..373294 (+) 369 WP_000849155.1 YxeA family protein -
  HTZ90_RS01665 (HTZ90_000333) - 373475..374047 (+) 573 WP_000769723.1 PepSY domain-containing protein -
  HTZ90_RS01670 (HTZ90_000334) - 374185..374448 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  HTZ90_RS01675 (HTZ90_000335) - 374742..374996 (+) 255 WP_000466746.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=467444 HTZ90_RS01535 WP_000934799.1 354928..355431(+) (ssbA) [Staphylococcus aureus strain WKZ-1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=467444 HTZ90_RS01535 WP_000934799.1 354928..355431(+) (ssbA) [Staphylococcus aureus strain WKZ-1]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365