Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPV225_RS00215 Genome accession   NC_017355
Coordinates   37322..38458 (+) Length   378 a.a.
NCBI ID   WP_001045875.1    Uniprot ID   -
Organism   Helicobacter pylori v225d     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32322..43458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPV225_RS00180 (HPV225_0042) panD 32771..33121 (+) 351 WP_000142290.1 aspartate 1-decarboxylase -
  HPV225_RS00185 (HPV225_0043) - 33132..33434 (+) 303 WP_000347918.1 YbaB/EbfC family nucleoid-associated protein -
  HPV225_RS00190 (HPV225_0044) - 33434..34429 (+) 996 WP_000468451.1 PDZ domain-containing protein -
  HPV225_RS00195 (HPV225_0045) comB6 34437..35492 (+) 1056 WP_000786695.1 P-type conjugative transfer protein TrbL Machinery gene
  HPV225_RS00200 (HPV225_0046) comB7 35508..35621 (+) 114 WP_001217871.1 hypothetical protein Machinery gene
  HPV225_RS00205 (HPV225_0047) comB8 35618..36361 (+) 744 WP_000660500.1 type IV secretion system protein Machinery gene
  HPV225_RS00210 (HPV225_0048) comB9 36361..37329 (+) 969 WP_014533574.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPV225_RS00215 (HPV225_0049) comB10 37322..38458 (+) 1137 WP_001045875.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPV225_RS00220 (HPV225_0050) - 38528..39940 (+) 1413 WP_000694831.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPV225_RS00225 (HPV225_0051) gmd 39951..41096 (+) 1146 WP_014533575.1 GDP-mannose 4,6-dehydratase -
  HPV225_RS00230 (HPV225_0052) - 41089..42021 (+) 933 WP_001002522.1 GDP-L-fucose synthase family protein -
  HPV225_RS00235 (HPV225_0053) hypE 42293..43291 (-) 999 WP_000378784.1 hydrogenase expression/formation protein HypE -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42004.56 Da        Isoelectric Point: 9.9837

>NTDB_id=46728 HPV225_RS00215 WP_001045875.1 37322..38458(+) (comB10) [Helicobacter pylori v225d]
MNKWLKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSSPIDLKANTTPSKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRGFISPNTDIFFPIPKENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=46728 HPV225_RS00215 WP_001045875.1 37322..38458(+) (comB10) [Helicobacter pylori v225d]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCTACCATCAAAGCCTTACAAGAGCAACTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCTCTCCCATAGATTTAAAAGC
AAATACAACCCCTTCTAAAAAAGACTTTTCTCTAAAGCAATTAGATCTACTGGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGGGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGGCTTCATTTCGCCCAATACTGACATTTTTTTCCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

95.767

100

0.958

Multiple sequence alignment