Detailed information NTG0046724

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPV225_RS00195
• Genome accession: NC_017355
• Coordinates: 34437..35492 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786695.1
• Uniprot ID: -
• Organism: Helicobacter pylori v225d
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29437..40492

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPV225_RS00165 (HPV225_0039)	-	29856..30269 (+)	414	WP_001022998.1	universal stress protein	-
HPV225_RS00170 (HPV225_0040)	-	30284..30559 (+)	276	WP_000784857.1	ATP-dependent Clp protease adaptor ClpS	-
HPV225_RS00175 (HPV225_0041)	-	30559..32781 (+)	2223	WP_001051548.1	AAA family ATPase	-
HPV225_RS00180 (HPV225_0042)	panD	32771..33121 (+)	351	WP_000142290.1	aspartate 1-decarboxylase	-
HPV225_RS00185 (HPV225_0043)	-	33132..33434 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HPV225_RS00190 (HPV225_0044)	-	33434..34429 (+)	996	WP_000468451.1	PDZ domain-containing protein	-
HPV225_RS00195 (HPV225_0045)	comB6	34437..35492 (+)	1056	WP_000786695.1	P-type conjugative transfer protein TrbL	Machinery gene
HPV225_RS00200 (HPV225_0046)	comB7	35508..35621 (+)	114	WP_001217871.1	hypothetical protein	Machinery gene
HPV225_RS00205 (HPV225_0047)	comB8	35618..36361 (+)	744	WP_000660500.1	type IV secretion system protein	Machinery gene
HPV225_RS00210 (HPV225_0048)	comB9	36361..37329 (+)	969	WP_014533574.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPV225_RS00215 (HPV225_0049)	comB10	37322..38458 (+)	1137	WP_001045875.1	DNA type IV secretion system protein ComB10	Machinery gene
HPV225_RS00220 (HPV225_0050)	-	38528..39940 (+)	1413	WP_000694831.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39781.68 Da
• Isoelectric Point: 9.0413

>NTDB_id=46724 HPV225_RS00195 WP_000786695.1 34437..35492(+) (comB6) [Helicobacter pylori v225d]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSTLTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKAWRSVVVACLKKCFTLGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSISSSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=46724 HPV225_RS00195 WP_000786695.1 34437..35492(+) (comB6) [Helicobacter pylori v225d]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCATTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACCAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTGGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAGCCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCACTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TAGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCATTTCTTCTTCTACAAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACTACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966