Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPV225_RS00200 | Genome accession | NC_017355 |
| Coordinates | 35508..35621 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217871.1 | Uniprot ID | - |
| Organism | Helicobacter pylori v225d | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 30508..40621
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPV225_RS00175 (HPV225_0041) | - | 30559..32781 (+) | 2223 | WP_001051548.1 | AAA family ATPase | - |
| HPV225_RS00180 (HPV225_0042) | panD | 32771..33121 (+) | 351 | WP_000142290.1 | aspartate 1-decarboxylase | - |
| HPV225_RS00185 (HPV225_0043) | - | 33132..33434 (+) | 303 | WP_000347918.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPV225_RS00190 (HPV225_0044) | - | 33434..34429 (+) | 996 | WP_000468451.1 | PDZ domain-containing protein | - |
| HPV225_RS00195 (HPV225_0045) | comB6 | 34437..35492 (+) | 1056 | WP_000786695.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPV225_RS00200 (HPV225_0046) | comB7 | 35508..35621 (+) | 114 | WP_001217871.1 | hypothetical protein | Machinery gene |
| HPV225_RS00205 (HPV225_0047) | comB8 | 35618..36361 (+) | 744 | WP_000660500.1 | type IV secretion system protein | Machinery gene |
| HPV225_RS00210 (HPV225_0048) | comB9 | 36361..37329 (+) | 969 | WP_014533574.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPV225_RS00215 (HPV225_0049) | comB10 | 37322..38458 (+) | 1137 | WP_001045875.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPV225_RS00220 (HPV225_0050) | - | 38528..39940 (+) | 1413 | WP_000694831.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4323.29 Da Isoelectric Point: 9.3572
>NTDB_id=46725 HPV225_RS00200 WP_001217871.1 35508..35621(+) (comB7) [Helicobacter pylori v225d]
MRIFFVIMGLMLFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLMLFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=46725 HPV225_RS00200 WP_001217871.1 35508..35621(+) (comB7) [Helicobacter pylori v225d]
ATGAGAATTTTTTTTGTCATTATGGGGCTAATGTTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTCATTATGGGGCTAATGTTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
94.595 |
100 |
0.946 |