Detailed information NTG0046727

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPV225_RS00210
• Genome accession: NC_017355
• Coordinates: 36361..37329 (+)
• Length: 322 a.a.
• NCBI ID: WP_014533574.1
• Uniprot ID: -
• Organism: Helicobacter pylori v225d
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31361..42329

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPV225_RS00180 (HPV225_0042)	panD	32771..33121 (+)	351	WP_000142290.1	aspartate 1-decarboxylase	-
HPV225_RS00185 (HPV225_0043)	-	33132..33434 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HPV225_RS00190 (HPV225_0044)	-	33434..34429 (+)	996	WP_000468451.1	PDZ domain-containing protein	-
HPV225_RS00195 (HPV225_0045)	comB6	34437..35492 (+)	1056	WP_000786695.1	P-type conjugative transfer protein TrbL	Machinery gene
HPV225_RS00200 (HPV225_0046)	comB7	35508..35621 (+)	114	WP_001217871.1	hypothetical protein	Machinery gene
HPV225_RS00205 (HPV225_0047)	comB8	35618..36361 (+)	744	WP_000660500.1	type IV secretion system protein	Machinery gene
HPV225_RS00210 (HPV225_0048)	comB9	36361..37329 (+)	969	WP_014533574.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPV225_RS00215 (HPV225_0049)	comB10	37322..38458 (+)	1137	WP_001045875.1	DNA type IV secretion system protein ComB10	Machinery gene
HPV225_RS00220 (HPV225_0050)	-	38528..39940 (+)	1413	WP_000694831.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPV225_RS00225 (HPV225_0051)	gmd	39951..41096 (+)	1146	WP_014533575.1	GDP-mannose 4,6-dehydratase	-
HPV225_RS00230 (HPV225_0052)	-	41089..42021 (+)	933	WP_001002522.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 322 a.a.
• Molecular weight: 37191.87 Da
• Isoelectric Point: 9.5534

>NTDB_id=46727 HPV225_RS00210 WP_014533574.1 36361..37329(+) (comB9) [Helicobacter pylori v225d]
MRKVLYALMGFLLVFGALKADDFLEETNETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALEKAPTNNKPLKEEKEETKEKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLWTCSKK
SKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGK
NE

Nucleotide

• Length: 969 bp

>NTDB_id=46727 HPV225_RS00210 WP_014533574.1 36361..37329(+) (comB9) [Helicobacter pylori v225d]
ATGCGTAAGGTTTTATACGCTCTTATGGGCTTTTTGTTGGTTTTTGGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAAC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATGTCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATGCCCTTGAAAAGGCTCCCACAAACAACAAGCCCTTAAA
AGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAAACTATAACGATTGGCGATAGCACTAATGCAATGAAAATCGTTA
AAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGACTTGTTCTAAAAAA
TCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCACT
CTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTA
TCGCTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAA
AATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-313)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.252	100	0.944