Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0X92_RS00995 Genome accession   NZ_CP059130
Coordinates   217887..218423 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain Ec55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 211078..237967 217887..218423 within 0


Gene organization within MGE regions


Location: 211078..237967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0X92_RS00970 (H0X92_00975) - 211078..212898 (-) 1821 WP_000704416.1 ATP-binding protein -
  H0X92_RS00975 (H0X92_00980) aphA 213175..213888 (+) 714 WP_001226933.1 acid phosphatase AphA -
  H0X92_RS00980 (H0X92_00985) yjbQ 213999..214415 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H0X92_RS00985 (H0X92_00990) yjbR 214419..214775 (+) 357 WP_000153726.1 MmcQ/YjbR family DNA-binding protein -
  H0X92_RS00990 (H0X92_00995) uvrA 214810..217632 (-) 2823 WP_000357755.1 excinuclease ABC subunit UvrA -
  H0X92_RS00995 (H0X92_01000) ssb 217887..218423 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H0X92_RS01000 (H0X92_01005) - 218641..219816 (+) 1176 WP_044067894.1 site-specific integrase -
  H0X92_RS01005 (H0X92_01010) - 219813..221411 (+) 1599 WP_001050717.1 tyrosine-type recombinase/integrase -
  H0X92_RS01010 (H0X92_01015) - 221404..223413 (+) 2010 WP_001279565.1 hypothetical protein -
  H0X92_RS01015 (H0X92_01020) - 223406..223882 (+) 477 WP_000240784.1 hypothetical protein -
  H0X92_RS01020 (H0X92_01025) - 223943..225085 (+) 1143 WP_001172094.1 helix-turn-helix domain-containing protein -
  H0X92_RS01025 (H0X92_01030) - 225085..225636 (+) 552 WP_001136617.1 hypothetical protein -
  H0X92_RS01030 (H0X92_01035) - 225734..225958 (+) 225 WP_001283160.1 helix-turn-helix domain-containing protein -
  H0X92_RS01035 (H0X92_01040) - 225971..228112 (+) 2142 WP_034613856.1 N-6 DNA methylase -
  H0X92_RS01040 (H0X92_01045) - 228109..229263 (+) 1155 WP_000118957.1 restriction endonuclease subunit S -
  H0X92_RS01045 (H0X92_01050) - 229278..231410 (+) 2133 WP_001077932.1 RecQ family ATP-dependent DNA helicase -
  H0X92_RS01050 (H0X92_01055) - 231407..232795 (+) 1389 WP_001103168.1 DNA-processing protein DprA -
  H0X92_RS01055 (H0X92_01060) - 233024..234193 (-) 1170 Protein_201 IS3-like element ISEc52 family transposase -
  H0X92_RS01060 (H0X92_01065) - 234298..237303 (+) 3006 WP_219325658.1 type I restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=467250 H0X92_RS00995 WP_000168305.1 217887..218423(+) (ssb) [Escherichia coli strain Ec55]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=467250 H0X92_RS00995 WP_000168305.1 217887..218423(+) (ssb) [Escherichia coli strain Ec55]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489