Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0X93_RS01005 Genome accession   NZ_CP059125
Coordinates   217814..218350 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EC45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 212814..223350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0X93_RS00985 (H0X93_00990) aphA 213103..213816 (+) 714 WP_001307512.1 acid phosphatase AphA -
  H0X93_RS00990 (H0X93_00995) yjbQ 213927..214343 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H0X93_RS00995 (H0X93_01000) yjbR 214347..214703 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H0X93_RS01000 (H0X93_01005) uvrA 214738..217560 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  H0X93_RS01005 (H0X93_01010) ssb 217814..218350 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H0X93_RS01010 (H0X93_01015) yjcB 218449..218730 (-) 282 WP_001295689.1 YjcB family protein -
  H0X93_RS01015 (H0X93_01020) pdeC 219160..220035 (+) 876 Protein_193 c-di-GMP phosphodiesterase PdeC -
  H0X93_RS01020 (H0X93_01025) - 220091..220788 (+) 698 WP_226926670.1 IS1 family transposase -
  H0X93_RS01025 (H0X93_01030) - 220848..221522 (+) 675 WP_024167285.1 EAL domain-containing protein -
  H0X93_RS01030 (H0X93_01035) soxS 221525..221848 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H0X93_RS01035 (H0X93_01040) soxR 221934..222398 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=467227 H0X93_RS01005 WP_000168305.1 217814..218350(+) (ssb) [Escherichia coli strain EC45]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=467227 H0X93_RS01005 WP_000168305.1 217814..218350(+) (ssb) [Escherichia coli strain EC45]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489