Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0Z11_RS19300 Genome accession   NZ_CP059089
Coordinates   3898765..3899328 (-) Length   187 a.a.
NCBI ID   WP_010252180.1    Uniprot ID   -
Organism   Pantoea agglomerans strain AR1a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3893765..3904328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0Z11_RS19280 (H0Z11_19270) - 3894868..3895263 (+) 396 WP_003855733.1 transposase -
  H0Z11_RS19285 (H0Z11_19275) - 3896187..3897146 (-) 960 WP_208002555.1 DMT family transporter -
  H0Z11_RS19290 (H0Z11_19280) - 3897224..3898051 (-) 828 WP_031591778.1 AraC family transcriptional regulator -
  H0Z11_RS19295 (H0Z11_19285) - 3898172..3898693 (+) 522 WP_208002556.1 isochorismatase family protein -
  H0Z11_RS19300 (H0Z11_19290) ssb 3898765..3899328 (-) 564 WP_010252180.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H0Z11_RS19305 (H0Z11_19295) uvrA 3899553..3902381 (+) 2829 WP_208002557.1 excinuclease ABC subunit UvrA -
  H0Z11_RS19310 (H0Z11_19300) - 3902451..3903814 (+) 1364 WP_208002558.1 IS3 family transposase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19908.83 Da        Isoelectric Point: 5.2456

>NTDB_id=467202 H0Z11_RS19300 WP_010252180.1 3898765..3899328(-) (ssb) [Pantoea agglomerans strain AR1a]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAGAGAPAGGGAQGGGNNNGWGQPQQPQGNNNQFSGGAQS
RPQPQPQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=467202 H0Z11_RS19300 WP_010252180.1 3898765..3899328(-) (ssb) [Pantoea agglomerans strain AR1a]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTATATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGACAAGCAGACCGGTGAAAACAAAGAAATCACTG
AGTGGCACCGTGTGGTGCTGTTTGGCAAACTGGCTGAAGTCGCGGGTGAATACCTGAAAAAAGGGTCACAGGTCTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGATCAGGGTGGCCAGGAGCGTTACACCACAGAAGTCGTGGTTAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGTCAGCAGGGCGGTAACGCCGGTGCAGGCGCTCCAGCCGGTGGCGGCGCGCAGG
GCGGTGGCAACAACAATGGCTGGGGTCAGCCGCAGCAGCCGCAGGGCAACAATAACCAGTTCAGTGGCGGCGCGCAGTCC
CGTCCGCAGCCGCAGCCACAGAGCGCGCCGGCCAGCAACAACAACGAACCACCAATGGATTTCGACGACGATATTCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.229

100

0.701
  ssb Glaesserella parasuis strain SC1401

56.021

100

0.572
  ssb Neisseria gonorrhoeae MS11

46.354

100

0.476
  ssb Neisseria meningitidis MC58

46.561

100

0.471