Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0Z12_RS20790 Genome accession   NZ_CP059084
Coordinates   4220388..4220933 (-) Length   181 a.a.
NCBI ID   WP_013024173.1    Uniprot ID   A0A8A4K787
Organism   Pantoea ananatis strain OC5a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4215388..4225933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0Z12_RS20770 (H0Z12_20785) - 4216276..4216671 (+) 396 WP_014606933.1 transposase -
  H0Z12_RS20775 (H0Z12_20790) - 4218150..4218992 (-) 843 WP_013024176.1 AraC family transcriptional regulator -
  H0Z12_RS20780 (H0Z12_20795) - 4219107..4219625 (+) 519 WP_015701260.1 isochorismatase family protein -
  H0Z12_RS20785 (H0Z12_20800) - 4219722..4220294 (+) 573 WP_232285089.1 DUF1349 domain-containing protein -
  H0Z12_RS20790 (H0Z12_20805) ssb 4220388..4220933 (-) 546 WP_013024173.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H0Z12_RS20795 (H0Z12_20810) uvrA 4221156..4223984 (+) 2829 WP_128392441.1 excinuclease ABC subunit UvrA -
  H0Z12_RS20800 (H0Z12_20815) - 4224207..4224452 (-) 246 WP_019105657.1 TIGR04076 family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19611.52 Da        Isoelectric Point: 5.2456

>NTDB_id=467181 H0Z12_RS20790 WP_013024173.1 4220388..4220933(-) (ssb) [Pantoea ananatis strain OC5a]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAAGGGQGNNNGWGQPQQPQQANNNQFSGGAQSRPQQQ
PSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=467181 H0Z12_RS20790 WP_013024173.1 4220388..4220933(-) (ssb) [Pantoea ananatis strain OC5a]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACCTCGGAAAGCTGGCGCGATAAGCAGACCGGTGAAAACAAAGAAATCACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGCAGGCGGCGGCCAGGGCAACAACAACG
GTTGGGGCCAGCCTCAGCAACCGCAGCAGGCGAACAACAACCAGTTTAGCGGTGGTGCGCAGTCTCGCCCGCAGCAGCAG
CCAAGCGCACCTGCCAGCAACAACAATGAACCACCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.283

100

0.735
  ssb Glaesserella parasuis strain SC1401

57.812

100

0.613
  ssb Neisseria meningitidis MC58

46.154

100

0.464
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.464