Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HZS52_RS16520 | Genome accession | NZ_CP059082 |
| Coordinates | 3585258..3585755 (-) | Length | 165 a.a. |
| NCBI ID | WP_190373178.1 | Uniprot ID | - |
| Organism | Vreelandella titanicae strain SOB56 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3568130..3605255 | 3585258..3585755 | within | 0 |
Gene organization within MGE regions
Location: 3568130..3605255
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZS52_RS16425 (HZS52_16425) | - | 3568130..3569353 (-) | 1224 | WP_009287827.1 | transglycosylase SLT domain-containing protein | - |
| HZS52_RS16430 (HZS52_16430) | gloB | 3569384..3570151 (-) | 768 | WP_009287828.1 | hydroxyacylglutathione hydrolase | - |
| HZS52_RS16435 (HZS52_16435) | - | 3570263..3571165 (+) | 903 | WP_138801556.1 | methyltransferase domain-containing protein | - |
| HZS52_RS16440 (HZS52_16440) | rnhA | 3571158..3571628 (+) | 471 | WP_022523349.1 | ribonuclease HI | - |
| HZS52_RS16445 (HZS52_16445) | dnaQ | 3571628..3572368 (+) | 741 | WP_138801557.1 | DNA polymerase III subunit epsilon | - |
| HZS52_RS16450 (HZS52_16450) | nudC | 3572361..3573146 (+) | 786 | WP_190373173.1 | NAD(+) diphosphatase | - |
| HZS52_RS16455 (HZS52_16455) | - | 3573172..3573483 (-) | 312 | WP_022523352.1 | SCP2 sterol-binding domain-containing protein | - |
| HZS52_RS16460 (HZS52_16460) | sohB | 3573665..3574708 (+) | 1044 | WP_022523353.1 | protease SohB | - |
| HZS52_RS16465 (HZS52_16465) | - | 3574726..3575046 (-) | 321 | WP_022523354.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HZS52_RS16470 (HZS52_16470) | - | 3575325..3577298 (+) | 1974 | WP_263364928.1 | propionyl-CoA synthetase | - |
| HZS52_RS16475 (HZS52_16475) | - | 3577505..3578173 (+) | 669 | WP_009287831.1 | 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter | - |
| HZS52_RS16480 (HZS52_16480) | - | 3578214..3579017 (+) | 804 | WP_022523356.1 | alpha/beta fold hydrolase | - |
| HZS52_RS16485 (HZS52_16485) | - | 3579056..3579355 (-) | 300 | WP_223827941.1 | hypothetical protein | - |
| HZS52_RS16490 (HZS52_16490) | - | 3579396..3580532 (-) | 1137 | WP_190373174.1 | ABC transporter substrate-binding protein | - |
| HZS52_RS16495 (HZS52_16495) | - | 3580685..3582391 (+) | 1707 | WP_190373175.1 | potassium/proton antiporter | - |
| HZS52_RS24455 | - | 3582665..3582847 (-) | 183 | WP_223827942.1 | hypothetical protein | - |
| HZS52_RS16505 (HZS52_16505) | - | 3582822..3583676 (-) | 855 | WP_223827943.1 | tyrosine-type recombinase/integrase | - |
| HZS52_RS16510 (HZS52_16510) | - | 3583771..3583893 (-) | 123 | WP_190373176.1 | DUF4224 domain-containing protein | - |
| HZS52_RS16515 (HZS52_16515) | - | 3584544..3585044 (-) | 501 | WP_190373177.1 | hypothetical protein | - |
| HZS52_RS16520 (HZS52_16520) | ssb | 3585258..3585755 (-) | 498 | WP_190373178.1 | single-stranded DNA-binding protein | Machinery gene |
| HZS52_RS16525 (HZS52_16525) | - | 3585808..3586491 (-) | 684 | Protein_3262 | DUF2303 family protein | - |
| HZS52_RS16530 (HZS52_16530) | - | 3586592..3586951 (-) | 360 | WP_190373179.1 | hypothetical protein | - |
| HZS52_RS16535 (HZS52_16535) | - | 3587051..3587461 (-) | 411 | WP_190373180.1 | DUF3617 family protein | - |
| HZS52_RS16540 (HZS52_16540) | - | 3587562..3587792 (-) | 231 | WP_190374970.1 | hypothetical protein | - |
| HZS52_RS24460 | - | 3587775..3588013 (+) | 239 | Protein_3266 | IS4 family transposase | - |
| HZS52_RS16545 (HZS52_16545) | - | 3588289..3589299 (+) | 1011 | WP_190373181.1 | LacI family DNA-binding transcriptional regulator | - |
| HZS52_RS16550 (HZS52_16550) | tal | 3589430..3590383 (-) | 954 | WP_190373182.1 | transaldolase | - |
| HZS52_RS16555 (HZS52_16555) | - | 3590587..3591318 (-) | 732 | WP_190373183.1 | SDR family oxidoreductase | - |
| HZS52_RS16560 (HZS52_16560) | - | 3591386..3592366 (-) | 981 | WP_190373184.1 | ribose ABC transporter permease | - |
| HZS52_RS16565 (HZS52_16565) | - | 3592363..3593865 (-) | 1503 | WP_027959477.1 | sugar ABC transporter ATP-binding protein | - |
| HZS52_RS16570 (HZS52_16570) | - | 3593928..3594866 (-) | 939 | WP_190373185.1 | ABC transporter substrate-binding protein | - |
| HZS52_RS16575 (HZS52_16575) | - | 3595129..3595857 (-) | 729 | WP_190373186.1 | SDR family oxidoreductase | - |
| HZS52_RS16580 (HZS52_16580) | - | 3596264..3596674 (-) | 411 | WP_138801686.1 | hypothetical protein | - |
| HZS52_RS16585 (HZS52_16585) | - | 3596879..3597382 (-) | 504 | WP_141441081.1 | hypothetical protein | - |
| HZS52_RS16590 (HZS52_16590) | - | 3597643..3597933 (+) | 291 | WP_190373187.1 | hypothetical protein | - |
| HZS52_RS16595 (HZS52_16595) | - | 3598003..3598662 (+) | 660 | WP_223827944.1 | metallophosphoesterase | - |
| HZS52_RS16600 (HZS52_16600) | - | 3598659..3599180 (+) | 522 | WP_223827945.1 | VRR-NUC domain-containing protein | - |
| HZS52_RS16605 (HZS52_16605) | - | 3599180..3599740 (+) | 561 | WP_190373189.1 | hypothetical protein | - |
| HZS52_RS16610 (HZS52_16610) | - | 3599912..3600760 (-) | 849 | Protein_3280 | DUF6602 domain-containing protein | - |
| HZS52_RS16615 (HZS52_16615) | - | 3601042..3602166 (-) | 1125 | WP_190373191.1 | hypothetical protein | - |
| HZS52_RS16620 (HZS52_16620) | - | 3602661..3602846 (-) | 186 | WP_190373192.1 | hypothetical protein | - |
| HZS52_RS16625 (HZS52_16625) | - | 3603079..3603444 (+) | 366 | WP_190373193.1 | hypothetical protein | - |
| HZS52_RS16630 (HZS52_16630) | - | 3603623..3604009 (-) | 387 | WP_190373194.1 | hypothetical protein | - |
| HZS52_RS16635 (HZS52_16635) | - | 3604454..3604807 (+) | 354 | WP_223827946.1 | glycoside hydrolase family protein | - |
| HZS52_RS16640 (HZS52_16640) | - | 3605016..3605255 (+) | 240 | WP_190373195.1 | phage holin family protein | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18650.41 Da Isoelectric Point: 4.9160
>NTDB_id=467156 HZS52_RS16520 WP_190373178.1 3585258..3585755(-) (ssb) [Vreelandella titanicae strain SOB56]
MARGINKVILIGNLGQDPEVLFTQGGTAVANLNIATSDSWLDRNSGQRQERTEWHRVILFKKTAEIAQQYLRKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGCTGDYQGGQQGGYPQQNQNSQQNRPPQTQQNAPQNNYGAPDPGNFNDFD
DEIPF
MARGINKVILIGNLGQDPEVLFTQGGTAVANLNIATSDSWLDRNSGQRQERTEWHRVILFKKTAEIAQQYLRKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGCTGDYQGGQQGGYPQQNQNSQQNRPPQTQQNAPQNNYGAPDPGNFNDFD
DEIPF
Nucleotide
Download Length: 498 bp
>NTDB_id=467156 HZS52_RS16520 WP_190373178.1 3585258..3585755(-) (ssb) [Vreelandella titanicae strain SOB56]
ATGGCCCGAGGAATTAACAAAGTCATTTTGATTGGCAACCTGGGCCAAGACCCAGAAGTACTCTTCACCCAGGGCGGTAC
CGCTGTCGCCAATCTCAACATTGCTACCAGTGACAGCTGGCTAGACCGCAATAGCGGCCAGCGACAAGAGCGCACTGAGT
GGCATCGCGTCATCTTATTCAAAAAAACAGCAGAAATTGCCCAGCAGTACCTACGCAAAGGCTCAAAGGTCTATATCGAA
GGTCGACTGCAAACCCGTAAATGGCAAGATCAGAACGGTCAGGATCGCTATAGCACCGAGATTGTCGCTAACGACATGCA
AATGCTGGATGGCTGCACCGGTGATTATCAAGGCGGCCAGCAAGGCGGCTACCCCCAGCAAAACCAGAATTCACAGCAGA
ATCGCCCACCCCAAACCCAGCAGAACGCCCCGCAAAATAACTACGGCGCTCCTGATCCAGGCAACTTCAACGACTTTGAC
GACGAGATACCGTTCTGA
ATGGCCCGAGGAATTAACAAAGTCATTTTGATTGGCAACCTGGGCCAAGACCCAGAAGTACTCTTCACCCAGGGCGGTAC
CGCTGTCGCCAATCTCAACATTGCTACCAGTGACAGCTGGCTAGACCGCAATAGCGGCCAGCGACAAGAGCGCACTGAGT
GGCATCGCGTCATCTTATTCAAAAAAACAGCAGAAATTGCCCAGCAGTACCTACGCAAAGGCTCAAAGGTCTATATCGAA
GGTCGACTGCAAACCCGTAAATGGCAAGATCAGAACGGTCAGGATCGCTATAGCACCGAGATTGTCGCTAACGACATGCA
AATGCTGGATGGCTGCACCGGTGATTATCAAGGCGGCCAGCAAGGCGGCTACCCCCAGCAAAACCAGAATTCACAGCAGA
ATCGCCCACCCCAAACCCAGCAGAACGCCCCGCAAAATAACTACGGCGCTCCTGATCCAGGCAACTTCAACGACTTTGAC
GACGAGATACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.249 |
100 |
0.606 |
| ssb | Glaesserella parasuis strain SC1401 |
47.753 |
100 |
0.515 |
| ssb | Neisseria gonorrhoeae MS11 |
46.821 |
100 |
0.491 |
| ssb | Neisseria meningitidis MC58 |
46.821 |
100 |
0.491 |