Detailed information NTG0046715

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPKB_RS06495
• Genome accession: NC_017354
• Coordinates: 1334074..1335036 (-)
• Length: 320 a.a.
• NCBI ID: WP_014533534.1
• Uniprot ID: -
• Organism: Helicobacter pylori 52
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1329074..1340036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPKB_RS06475 (HPKB_1278)	-	1329379..1330311 (-)	933	WP_001002433.1	GDP-L-fucose synthase family protein	-
HPKB_RS06480 (HPKB_1279)	gmd	1330304..1331449 (-)	1146	WP_014533533.1	GDP-mannose 4,6-dehydratase	-
HPKB_RS06485 (HPKB_1280)	-	1331463..1332875 (-)	1413	WP_000694850.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPKB_RS06490 (HPKB_1281)	comB10	1332945..1334081 (-)	1137	WP_001045779.1	DNA type IV secretion system protein ComB10	Machinery gene
HPKB_RS06495 (HPKB_1282)	comB9	1334074..1335036 (-)	963	WP_014533534.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPKB_RS06500 (HPKB_1283)	comB8	1335036..1335773 (-)	738	WP_000660526.1	type IV secretion system protein	Machinery gene
HPKB_RS06505 (HPKB_1284)	comB7	1335770..1335895 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPKB_RS06510 (HPKB_1285)	comB6	1335911..1336966 (-)	1056	WP_000786672.1	P-type conjugative transfer protein TrbL	Machinery gene
HPKB_RS06515 (HPKB_1286)	-	1336974..1337969 (-)	996	WP_000468447.1	PDZ domain-containing protein	-
HPKB_RS06520 (HPKB_1287)	-	1337969..1338262 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
HPKB_RS06525 (HPKB_1288)	panD	1338273..1338623 (-)	351	WP_000142205.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36739.32 Da
• Isoelectric Point: 9.3756

>NTDB_id=46715 HPKB_RS06495 WP_014533534.1 1334074..1335036(-) (comB9) [Helicobacter pylori 52]
MRKVLCALVGFLLVSSALKADDFLEEANETSPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=46715 HPKB_RS06495 WP_014533534.1 1334074..1335036(-) (comB9) [Helicobacter pylori 52]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACATCCCCGGCAAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATATTAGAGAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAACCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGATAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATCTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938