Detailed information NTG0046718

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPKB_RS06510
• Genome accession: NC_017354
• Coordinates: 1335911..1336966 (-)
• Length: 351 a.a.
• NCBI ID: WP_000786672.1
• Uniprot ID: -
• Organism: Helicobacter pylori 52
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1330911..1341966

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPKB_RS06485 (HPKB_1280)	-	1331463..1332875 (-)	1413	WP_000694850.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPKB_RS06490 (HPKB_1281)	comB10	1332945..1334081 (-)	1137	WP_001045779.1	DNA type IV secretion system protein ComB10	Machinery gene
HPKB_RS06495 (HPKB_1282)	comB9	1334074..1335036 (-)	963	WP_014533534.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPKB_RS06500 (HPKB_1283)	comB8	1335036..1335773 (-)	738	WP_000660526.1	type IV secretion system protein	Machinery gene
HPKB_RS06505 (HPKB_1284)	comB7	1335770..1335895 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPKB_RS06510 (HPKB_1285)	comB6	1335911..1336966 (-)	1056	WP_000786672.1	P-type conjugative transfer protein TrbL	Machinery gene
HPKB_RS06515 (HPKB_1286)	-	1336974..1337969 (-)	996	WP_000468447.1	PDZ domain-containing protein	-
HPKB_RS06520 (HPKB_1287)	-	1337969..1338262 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
HPKB_RS06525 (HPKB_1288)	panD	1338273..1338623 (-)	351	WP_000142205.1	aspartate 1-decarboxylase	-
HPKB_RS06530 (HPKB_1289)	-	1338613..1340838 (-)	2226	WP_001051539.1	AAA family ATPase	-
HPKB_RS06535 (HPKB_1290)	-	1340838..1341113 (-)	276	WP_000784918.1	ATP-dependent Clp protease adaptor ClpS	-
HPKB_RS06540 (HPKB_1291)	-	1341136..1341549 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39868.85 Da
• Isoelectric Point: 9.0412

>NTDB_id=46718 HPKB_RS06510 WP_000786672.1 1335911..1336966(-) (comB6) [Helicobacter pylori 52]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=46718 HPKB_RS06510 WP_000786672.1 1335911..1336966(-) (comB6) [Helicobacter pylori 52]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGTGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTGGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966