Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0S56_RS13380 Genome accession   NZ_CP059081
Coordinates   2803896..2804483 (-) Length   195 a.a.
NCBI ID   WP_005245776.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2798896..2809483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS13355 (H0S56_13350) - 2799655..2799882 (+) 228 WP_195725275.1 hypothetical protein -
  H0S56_RS13365 (H0S56_13360) - 2800239..2801087 (-) 849 WP_195725276.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  H0S56_RS13370 (H0S56_13365) - 2801091..2802398 (-) 1308 WP_195725277.1 FAD-dependent oxidoreductase -
  H0S56_RS13375 (H0S56_13370) ahpC 2803021..2803584 (-) 564 WP_005105379.1 alkyl hydroperoxide reductase subunit C -
  H0S56_RS13380 (H0S56_13375) ssb 2803896..2804483 (-) 588 WP_005245776.1 single-stranded DNA-binding protein Machinery gene
  H0S56_RS13385 (H0S56_13380) - 2804535..2805899 (-) 1365 WP_035340698.1 MFS transporter -
  H0S56_RS13390 (H0S56_13385) - 2806054..2807142 (-) 1089 WP_195725278.1 DUF475 domain-containing protein -
  H0S56_RS13395 (H0S56_13390) tenA 2807365..2808036 (+) 672 WP_195725279.1 thiaminase II -
  H0S56_RS13400 (H0S56_13395) - 2808259..2808627 (+) 369 WP_004729209.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21332.04 Da        Isoelectric Point: 6.4820

>NTDB_id=467141 H0S56_RS13380 WP_005245776.1 2803896..2804483(-) (ssb) [Acinetobacter lwoffii strain 12CE1]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYGNNPQSGYGSAPQQGGFSNN
QGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=467141 H0S56_RS13380 WP_005245776.1 2803896..2804483(-) (ssb) [Acinetobacter lwoffii strain 12CE1]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTCTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGTAAAGGCTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAGCGCTATACGACGGAAATTCGTGGTGAACAAATGCAGAT
GTTAGACTCTAGCCGTCCTCAAAATGATCAGGGCGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAGGGTGGTTATGGCAATAACCCTCAATCAGGTTATGGTTCAGCGCCACAGCAAGGCGGTTTTAGCAACAAC
CAGGGCGGCGGTTATGGCAATAATAATCCGAGTGGTTTTGCGCCAAAATCTGCACCTGCTCCAACAGCAGCACCTGCAGC
AGATCTAGATGATGACCTTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.783

100

0.497
  ssb Vibrio cholerae strain A1552

41.206

100

0.421
  ssb Neisseria meningitidis MC58

37.5

98.462

0.369
  ssb Neisseria gonorrhoeae MS11

37.5

98.462

0.369