Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   H0S57_RS01115 Genome accession   NZ_CP059080
Coordinates   252246..253379 (-) Length   377 a.a.
NCBI ID   WP_151837060.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain E10B     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 247246..258379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS01085 (H0S57_01085) - 247452..248042 (-) 591 WP_151837064.1 hypothetical protein -
  H0S57_RS01090 (H0S57_01090) - 248178..248552 (-) 375 WP_151837063.1 RcnB family protein -
  H0S57_RS01095 (H0S57_01095) - 248751..249296 (-) 546 WP_058868685.1 glutathione peroxidase -
  H0S57_RS01100 (H0S57_01100) - 249420..249974 (-) 555 WP_148826929.1 hypothetical protein -
  H0S57_RS01105 (H0S57_01105) - 250311..251231 (+) 921 WP_151837062.1 DMT family transporter -
  H0S57_RS01110 (H0S57_01110) - 251631..252200 (-) 570 WP_151837061.1 L-threonylcarbamoyladenylate synthase -
  H0S57_RS01115 (H0S57_01115) dprA 252246..253379 (-) 1134 WP_151837060.1 DNA-processing protein DprA Machinery gene
  H0S57_RS01120 (H0S57_01120) tsaP 253402..254556 (-) 1155 WP_151837059.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  H0S57_RS01125 (H0S57_01125) def 254677..255210 (+) 534 WP_004684452.1 peptide deformylase -
  H0S57_RS01130 (H0S57_01130) - 255301..255738 (+) 438 WP_151837068.1 DUF2946 family protein -
  H0S57_RS01135 (H0S57_01135) - 255811..257877 (+) 2067 WP_151837058.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41679.26 Da        Isoelectric Point: 6.7787

>NTDB_id=467068 H0S57_RS01115 WP_151837060.1 252246..253379(-) (dprA) [Acinetobacter johnsonii strain E10B]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQQHFGTSTKAVAASNLQIWPNLGLHKSHLQRVIEIQTPAGQTKLQTLLQDV
QASCDFILLDSESHYPSQLLPYSDRPPILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKHQRTIAVMGTGLDLTYPSQHQTLRKQILENNGCIISEFLPHTPPLQHNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAKSAAEQGKTIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQENTPSISIDIPS
NLLELYNQLDWVGQNMDQLNFKLNTDIATLTSQLMELEILGLAQQQAGNYLRCRSSQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=467068 H0S57_RS01115 WP_151837060.1 252246..253379(-) (dprA) [Acinetobacter johnsonii strain E10B]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTAGTTCAGCATTCTTTATCGAGCTTTCA
AAAGCTACAGCAGCATTTTGGCACAAGCACAAAAGCTGTTGCTGCCTCCAATCTTCAGATCTGGCCAAATCTCGGCTTAC
ACAAAAGTCATCTACAACGTGTCATAGAAATTCAAACACCTGCCGGCCAAACCAAATTACAAACTTTACTACAGGACGTC
CAAGCTAGTTGTGATTTTATTTTGCTTGATAGTGAAAGTCATTATCCCTCGCAGTTGCTGCCCTATTCTGACCGGCCACC
AATTTTATTTGGTCAGGGTAATCCACAAAGCCTATTACAACCTCAAGTTGCTATCGTCGGCAGTCGAAAACCCAGTCCAC
ACGGCAAACAAGTGGCTTATGACTTTGCCTATTACCTCGCCGAAAAGGGCTTTTATATTTGCAGTGGTTTAGCTGAAGGT
ATTGATGCAGCGGCACATCAGGGTGGCTTAAAACATCAACGCACTATTGCGGTGATGGGCACGGGCTTAGATCTCACTTA
CCCCTCCCAACATCAAACACTGCGTAAGCAAATATTAGAGAATAATGGCTGTATTATTAGTGAATTTTTACCACATACAC
CGCCTTTACAGCATAATTTTCCACGGCGCAACCGCATCGTCAGTGCATTGAGTTTAGGCGTCGTGGTTGCAGAAGCCGCA
CTCAAAAGTGGCTCTCTTGGCACAGCCAAATCTGCTGCTGAACAAGGGAAAACCATTTTTGCGATTCCCGGTCATATTTA
TAGTGAACACCATCAAGGTTGTCATCAACTAATCCGAGAAGGGGCCATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ACCTGGCACTCCCCACTCAATGGCATAGCCAATCCCAGTCACAAGAAAATACACCAAGCATTAGTATTGATATCCCATCT
AATTTACTCGAACTTTATAATCAACTGGATTGGGTGGGACAAAATATGGATCAACTTAATTTCAAACTTAACACCGATAT
TGCCACACTCACTAGCCAGTTAATGGAACTGGAGATTTTGGGGCTCGCACAACAACAGGCTGGCAATTATCTGCGTTGCC
GTTCCAGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.489

99.735

0.663

  dprA Acinetobacter baumannii D1279779

64.737

100

0.653

  dprA Acinetobacter baylyi ADP1

61.417

100

0.621