Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   H0S57_RS01120 Genome accession   NZ_CP059080
Coordinates   253402..254556 (-) Length   384 a.a.
NCBI ID   WP_151837059.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain E10B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 248402..259556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS01095 (H0S57_01095) - 248751..249296 (-) 546 WP_058868685.1 glutathione peroxidase -
  H0S57_RS01100 (H0S57_01100) - 249420..249974 (-) 555 WP_148826929.1 hypothetical protein -
  H0S57_RS01105 (H0S57_01105) - 250311..251231 (+) 921 WP_151837062.1 DMT family transporter -
  H0S57_RS01110 (H0S57_01110) - 251631..252200 (-) 570 WP_151837061.1 L-threonylcarbamoyladenylate synthase -
  H0S57_RS01115 (H0S57_01115) dprA 252246..253379 (-) 1134 WP_151837060.1 DNA-processing protein DprA Machinery gene
  H0S57_RS01120 (H0S57_01120) tsaP 253402..254556 (-) 1155 WP_151837059.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  H0S57_RS01125 (H0S57_01125) def 254677..255210 (+) 534 WP_004684452.1 peptide deformylase -
  H0S57_RS01130 (H0S57_01130) - 255301..255738 (+) 438 WP_151837068.1 DUF2946 family protein -
  H0S57_RS01135 (H0S57_01135) - 255811..257877 (+) 2067 WP_151837058.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42281.32 Da        Isoelectric Point: 8.5500

>NTDB_id=467069 H0S57_RS01120 WP_151837059.1 253402..254556(-) (tsaP) [Acinetobacter johnsonii strain E10B]
MKKVFMGMPSFSALGFKQHMLALAICLSVGAGVISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVGSAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKISPSVVDK

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=467069 H0S57_RS01120 WP_151837059.1 253402..254556(-) (tsaP) [Acinetobacter johnsonii strain E10B]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGATTTGTCT
AAGTGTTGGCGCTGGCGTCATTTCAACAGCTCAAGCGGCGCCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCGATACCCTGTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCAGGTGACCGTTTATTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCGTTGGCGCTGCCGATCAGCGTGTCATTGCAGG
TAAAGGGCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGGCTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGATGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCAAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGTAATATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAAATTTCTCCCTCTGTAGTGGATAAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.664