Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0S58_RS00740 Genome accession   NZ_CP059079
Coordinates   166203..166775 (+) Length   190 a.a.
NCBI ID   WP_193890620.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 161203..171775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS00715 (H0S58_00715) - 161621..161974 (+) 354 WP_193890641.1 DUF1304 domain-containing protein -
  H0S58_RS00720 (H0S58_00720) - 162037..162378 (+) 342 WP_193890614.1 GlpM family protein -
  H0S58_RS00725 (H0S58_00725) tenA 162639..163319 (-) 681 WP_195726873.1 thiaminase II -
  H0S58_RS00730 (H0S58_00730) - 163552..164637 (+) 1086 WP_053579294.1 DUF475 domain-containing protein -
  H0S58_RS00735 (H0S58_00735) - 164787..166151 (+) 1365 WP_195726874.1 MFS transporter -
  H0S58_RS00740 (H0S58_00740) ssb 166203..166775 (+) 573 WP_193890620.1 single-stranded DNA-binding protein Machinery gene
  H0S58_RS00745 (H0S58_00745) - 166886..167221 (-) 336 WP_195726875.1 hypothetical protein -
  H0S58_RS00750 (H0S58_00750) ahpC 167442..168005 (+) 564 WP_195726876.1 alkyl hydroperoxide reductase subunit C -
  H0S58_RS00755 (H0S58_00755) - 168192..169067 (+) 876 WP_195726877.1 pirin family protein -
  H0S58_RS00760 (H0S58_00760) - 169686..170984 (+) 1299 WP_195726878.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21145.78 Da        Isoelectric Point: 6.4820

>NTDB_id=467027 H0S58_RS00740 WP_193890620.1 166203..166775(+) (ssb) [Acinetobacter sp. TTH0-4 strain 1BD1]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSNNRQQSEQSADNGGYNQPRFNNNQGGANNSGYNNNQNNQGGFNNSQQSGY
ANNNPAAFQPKPQSAPAATAPSDLDDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=467027 H0S58_RS00740 WP_193890620.1 166203..166775(+) (ssb) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGCGTGGTGTTAATAAAGTCATTTTAGTGGGAACTTTAGGAAAAGATCCTGAAACCAAAACTTTTCCAAATGGTGGTTC
TCTTACTCAGTTTTCAATTGCAACGAGCGATTCGTGGACAGATAAAAATACGGGTGAGCGCAAAGAACAGACGGAATGGC
ACCGTATTGTATTGCATAATCGTTTAGGTGAAATTGCACAACAATATCTACGTAAAGGTTCTAAAGTATATATTGAAGGT
TCATTGCGTACACGCCAATGGACAGATCAAAGCGGTCAAGAGCGCTACACCACAGAAATTCGTGGTGAGCAGATGCAAAT
GCTAGACAGCAACAACCGTCAGCAAAGTGAACAGAGTGCGGATAACGGTGGTTATAATCAACCTCGTTTTAATAATAATC
AGGGTGGTGCAAACAACTCGGGTTATAACAACAACCAAAATAATCAAGGCGGTTTTAACAACAGTCAGCAAAGCGGTTAT
GCCAACAATAACCCAGCGGCTTTTCAGCCTAAACCTCAATCAGCACCTGCGGCGACTGCGCCGAGTGATTTAGATGATGA
TTTACCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.269

100

0.532
  ssb Vibrio cholerae strain A1552

46.269

100

0.489
  ssb Neisseria meningitidis MC58

38.743

100

0.389
  ssb Neisseria gonorrhoeae MS11

38.743

100

0.389