Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | H0S59_RS16150 | Genome accession | NZ_CP059078 |
| Coordinates | 3471850..3472203 (+) | Length | 117 a.a. |
| NCBI ID | WP_111937012.1 | Uniprot ID | - |
| Organism | Acinetobacter nosocomialis strain WM98B | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3441151..3474570 | 3471850..3472203 | within | 0 |
Gene organization within MGE regions
Location: 3441151..3474570
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0S59_RS15955 (H0S59_15965) | - | 3441151..3442149 (-) | 999 | WP_111937030.1 | phage portal protein | - |
| H0S59_RS15960 (H0S59_15970) | - | 3442149..3443936 (-) | 1788 | WP_111937032.1 | terminase large subunit domain-containing protein | - |
| H0S59_RS15965 (H0S59_15975) | - | 3444095..3444922 (+) | 828 | WP_057097124.1 | GPO family capsid scaffolding protein | - |
| H0S59_RS15970 (H0S59_15980) | - | 3444926..3445936 (+) | 1011 | WP_057097121.1 | phage major capsid protein, P2 family | - |
| H0S59_RS15975 (H0S59_15985) | gpM | 3445948..3446649 (+) | 702 | WP_111937029.1 | phage terminase small subunit | - |
| H0S59_RS15980 (H0S59_15990) | - | 3446752..3447204 (+) | 453 | WP_111937028.1 | head completion/stabilization protein | - |
| H0S59_RS15985 (H0S59_15995) | - | 3447205..3447414 (+) | 210 | WP_000666002.1 | tail protein X | - |
| H0S59_RS15990 (H0S59_16000) | - | 3447423..3447773 (+) | 351 | WP_001114936.1 | putative holin | - |
| H0S59_RS15995 (H0S59_16005) | - | 3447770..3448039 (+) | 270 | WP_024436838.1 | phage holin family protein | - |
| H0S59_RS16000 (H0S59_16010) | - | 3448036..3448866 (+) | 831 | WP_057082332.1 | N-acetylmuramidase family protein | - |
| H0S59_RS16005 (H0S59_16015) | - | 3448863..3449390 (+) | 528 | WP_111937027.1 | phage tail protein | - |
| H0S59_RS16010 (H0S59_16020) | - | 3449387..3449836 (+) | 450 | WP_111937026.1 | phage virion morphogenesis protein | - |
| H0S59_RS16015 (H0S59_16025) | - | 3449909..3450535 (+) | 627 | WP_111937025.1 | phage baseplate assembly protein V | - |
| H0S59_RS16020 (H0S59_16030) | - | 3450532..3450879 (+) | 348 | WP_000987743.1 | GPW/gp25 family protein | - |
| H0S59_RS16025 (H0S59_16035) | - | 3450876..3451778 (+) | 903 | WP_111937024.1 | baseplate J/gp47 family protein | - |
| H0S59_RS16030 (H0S59_16040) | - | 3451778..3452383 (+) | 606 | WP_111937023.1 | phage tail protein I | - |
| H0S59_RS19040 | - | 3452395..3455349 (+) | 2955 | WP_227555071.1 | phage tail protein | - |
| H0S59_RS16040 (H0S59_16050) | - | 3455336..3456511 (-) | 1176 | WP_111937022.1 | acyltransferase | - |
| H0S59_RS16045 (H0S59_16055) | - | 3456704..3457879 (+) | 1176 | WP_111937021.1 | phage tail sheath protein | - |
| H0S59_RS16050 (H0S59_16060) | - | 3457892..3458410 (+) | 519 | WP_111937020.1 | phage major tail tube protein | - |
| H0S59_RS16055 (H0S59_16065) | - | 3458477..3458818 (+) | 342 | WP_111937019.1 | phage tail assembly protein | - |
| H0S59_RS16060 (H0S59_16070) | - | 3458863..3458958 (+) | 96 | WP_235822283.1 | GpE family phage tail protein | - |
| H0S59_RS16065 (H0S59_16075) | - | 3458972..3461422 (+) | 2451 | WP_111937018.1 | phage tail tape measure protein | - |
| H0S59_RS16070 (H0S59_16080) | - | 3461429..3461869 (+) | 441 | WP_111937017.1 | phage tail protein | - |
| H0S59_RS16075 (H0S59_16085) | - | 3461870..3463183 (+) | 1314 | WP_111937016.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| H0S59_RS16080 (H0S59_16090) | - | 3463314..3463553 (+) | 240 | WP_000113727.1 | ogr/Delta-like zinc finger family protein | - |
| H0S59_RS16085 (H0S59_16095) | - | 3463550..3463750 (+) | 201 | WP_000130087.1 | TraR/DksA C4-type zinc finger protein | - |
| H0S59_RS16090 (H0S59_16100) | - | 3464061..3464807 (-) | 747 | WP_111937015.1 | hypothetical protein | - |
| H0S59_RS16095 (H0S59_16105) | - | 3464879..3465613 (-) | 735 | WP_000190074.1 | hypothetical protein | - |
| H0S59_RS16100 (H0S59_16110) | - | 3465929..3466123 (+) | 195 | WP_002001330.1 | hypothetical protein | - |
| H0S59_RS16105 (H0S59_16115) | - | 3466126..3466371 (+) | 246 | WP_000789360.1 | hypothetical protein | - |
| H0S59_RS16110 (H0S59_16120) | - | 3466472..3466687 (+) | 216 | WP_000556347.1 | hypothetical protein | - |
| H0S59_RS16115 (H0S59_16125) | - | 3466732..3467073 (-) | 342 | WP_000786717.1 | helix-turn-helix domain-containing protein | - |
| H0S59_RS16120 (H0S59_16130) | - | 3467166..3467357 (+) | 192 | WP_001043481.1 | hypothetical protein | - |
| H0S59_RS16125 (H0S59_16135) | - | 3467451..3470189 (+) | 2739 | WP_025464780.1 | toprim domain-containing protein | - |
| H0S59_RS16130 (H0S59_16140) | - | 3470186..3470521 (+) | 336 | WP_057097136.1 | hypothetical protein | - |
| H0S59_RS16135 (H0S59_16145) | - | 3470589..3471020 (+) | 432 | WP_001178667.1 | DUF2528 family protein | - |
| H0S59_RS16140 (H0S59_16150) | - | 3471023..3471541 (+) | 519 | WP_111937014.1 | hypothetical protein | - |
| H0S59_RS16145 (H0S59_16155) | - | 3471545..3471862 (+) | 318 | WP_111937013.1 | hypothetical protein | - |
| H0S59_RS16150 (H0S59_16160) | ssb | 3471850..3472203 (+) | 354 | WP_111937012.1 | single-stranded DNA-binding protein | Machinery gene |
| H0S59_RS16155 (H0S59_16165) | - | 3472213..3472950 (+) | 738 | WP_111937011.1 | 3'-5' exonuclease | - |
| H0S59_RS16160 (H0S59_16170) | - | 3472960..3473181 (+) | 222 | WP_059262583.1 | hypothetical protein | - |
| H0S59_RS16165 (H0S59_16175) | - | 3473178..3473474 (+) | 297 | WP_000218943.1 | hypothetical protein | - |
| H0S59_RS16170 (H0S59_16180) | - | 3473503..3474570 (-) | 1068 | WP_111937010.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13306.99 Da Isoelectric Point: 9.7939
>NTDB_id=467014 H0S59_RS16150 WP_111937012.1 3471850..3472203(+) (ssb) [Acinetobacter nosocomialis strain WM98B]
MRGINKVILVGVLGANPIPKQFQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGETACQFLKKGSKVYIEG
SLHTRKWTDQNNQDRYVTEVRAITFQSLDSLPQANPV
MRGINKVILVGVLGANPIPKQFQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGETACQFLKKGSKVYIEG
SLHTRKWTDQNNQDRYVTEVRAITFQSLDSLPQANPV
Nucleotide
Download Length: 354 bp
>NTDB_id=467014 H0S59_RS16150 WP_111937012.1 3471850..3472203(+) (ssb) [Acinetobacter nosocomialis strain WM98B]
ATGCGCGGAATAAACAAAGTGATATTGGTCGGTGTGCTTGGTGCCAATCCAATTCCTAAACAGTTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGCACTGGTGACTGGATTGAAAACACAGAGTGGC
ATCGTATTGTTGCCCACAACCGACTAGGTGAAACTGCCTGCCAATTTCTTAAAAAAGGTTCAAAAGTTTATATCGAAGGG
TCATTACATACACGGAAATGGACTGACCAAAACAATCAAGACCGTTACGTAACTGAAGTTAGAGCCATTACTTTTCAATC
GCTCGATAGCTTGCCACAAGCAAACCCGGTTTAA
ATGCGCGGAATAAACAAAGTGATATTGGTCGGTGTGCTTGGTGCCAATCCAATTCCTAAACAGTTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGCACTGGTGACTGGATTGAAAACACAGAGTGGC
ATCGTATTGTTGCCCACAACCGACTAGGTGAAACTGCCTGCCAATTTCTTAAAAAAGGTTCAAAAGTTTATATCGAAGGG
TCATTACATACACGGAAATGGACTGACCAAAACAATCAAGACCGTTACGTAACTGAAGTTAGAGCCATTACTTTTCAATC
GCTCGATAGCTTGCCACAAGCAAACCCGGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56.364 |
94.017 |
0.53 |
| ssb | Vibrio cholerae strain A1552 |
55.556 |
84.615 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
40.952 |
89.744 |
0.368 |
| ssb | Neisseria meningitidis MC58 |
40.952 |
89.744 |
0.368 |