Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZ993_RS16165 Genome accession   NZ_CP059068
Coordinates   3446325..3446837 (+) Length   170 a.a.
NCBI ID   WP_209393773.1    Uniprot ID   A0A975HYN9
Organism   Rhodoferax sp. AJA081-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3441325..3451837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ993_RS16160 (HZ993_16125) uvrA 3443118..3446237 (-) 3120 WP_209393772.1 excinuclease ABC subunit UvrA -
  HZ993_RS16165 (HZ993_16130) ssb 3446325..3446837 (+) 513 WP_209393773.1 single-stranded DNA-binding protein Machinery gene
  HZ993_RS16170 (HZ993_16135) - 3446911..3448170 (-) 1260 WP_209393774.1 putative Na+/H+ antiporter -
  HZ993_RS16175 (HZ993_16140) - 3448403..3449413 (+) 1011 WP_245213658.1 TIGR03790 family protein -
  HZ993_RS16180 (HZ993_16145) - 3449449..3450009 (+) 561 WP_209393776.1 hypothetical protein -
  HZ993_RS16185 (HZ993_16150) xrtB 3450049..3450948 (+) 900 WP_209393777.1 exosortase B -
  HZ993_RS16190 (HZ993_16155) epsI 3450945..3451637 (+) 693 WP_209393778.1 exosortase-associated protein EpsI, B-type -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18080.21 Da        Isoelectric Point: 5.9623

>NTDB_id=466969 HZ993_RS16165 WP_209393773.1 3446325..3446837(+) (ssb) [Rhodoferax sp. AJA081-3]
MASVNKVILVGNCGRDPEIRYLPSGQAVANVSVATSTRRKDKNTGESIESTEWHRVTFYDRLAEIAGEYVRKGRPIYVEG
RLKYGKYTDQSGVEKNTVDIIATELQLLGGREGMGGPGGDGDEGGGGAPAPRRMAPSAPPPRAAAAPAPRQAPPPRPASG
FDDMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=466969 HZ993_RS16165 WP_209393773.1 3446325..3446837(+) (ssb) [Rhodoferax sp. AJA081-3]
ATGGCATCCGTAAACAAAGTCATTCTGGTCGGCAATTGCGGCCGCGACCCCGAAATCCGTTACCTGCCGTCGGGCCAGGC
CGTGGCCAACGTCAGCGTGGCCACCAGCACCCGCCGCAAAGACAAGAACACCGGCGAAAGCATTGAGTCCACCGAGTGGC
ACCGCGTCACCTTTTATGACCGCCTGGCCGAGATCGCCGGTGAATACGTGCGCAAAGGCCGCCCCATTTACGTGGAAGGC
CGCCTCAAATACGGCAAATACACCGACCAGTCCGGTGTCGAAAAGAACACGGTCGACATCATCGCCACCGAACTGCAACT
TCTGGGCGGTCGTGAAGGCATGGGCGGCCCCGGTGGCGATGGTGACGAAGGCGGTGGCGGCGCCCCCGCACCCCGCCGTA
TGGCGCCCAGCGCTCCGCCACCCCGCGCGGCCGCAGCACCTGCGCCTCGCCAGGCTCCGCCGCCCCGGCCGGCCAGTGGT
TTTGATGACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5
  ssb Neisseria meningitidis MC58

47.159

100

0.488
  ssb Vibrio cholerae strain A1552

45.604

100

0.488
  ssb Glaesserella parasuis strain SC1401

44.086

100

0.482