Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0H12_RS26480 Genome accession   NZ_CP059052
Coordinates   5801414..5801959 (-) Length   181 a.a.
NCBI ID   WP_003255446.1    Uniprot ID   I7CBQ6
Organism   Pseudomonas putida strain BS3701     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5796414..5806959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0H12_RS26465 (H0H12_26465) - 5798172..5798933 (-) 762 WP_180688935.1 SDR family NAD(P)-dependent oxidoreductase -
  H0H12_RS26470 (H0H12_26470) - 5798955..5799740 (-) 786 WP_180688936.1 TSUP family transporter -
  H0H12_RS26475 (H0H12_26475) - 5799941..5801323 (+) 1383 WP_180688937.1 PLP-dependent aminotransferase family protein -
  H0H12_RS26480 (H0H12_26480) ssb 5801414..5801959 (-) 546 WP_003255446.1 single-stranded DNA-binding protein Machinery gene
  H0H12_RS26485 (H0H12_26485) - 5801969..5803363 (-) 1395 WP_180688938.1 MFS transporter -
  H0H12_RS26490 (H0H12_26490) uvrA 5803493..5806327 (+) 2835 WP_010951778.1 excinuclease ABC subunit UvrA -
  H0H12_RS26495 (H0H12_26495) bfr 5806396..5806860 (-) 465 WP_003255449.1 bacterioferritin -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20059.16 Da        Isoelectric Point: 5.9286

>NTDB_id=466865 H0H12_RS26480 WP_003255446.1 5801414..5801959(-) (ssb) [Pseudomonas putida strain BS3701]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=466865 H0H12_RS26480 WP_003255446.1 5801414..5801959(-) (ssb) [Pseudomonas putida strain BS3701]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCGTACAACCAGGGTGGCGGCAATTATGGTG
GTGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7CBQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.634

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.492