Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0H12_RS12875 Genome accession   NZ_CP059052
Coordinates   2810398..2810895 (-) Length   165 a.a.
NCBI ID   WP_180689912.1    Uniprot ID   A0A7D6ABZ9
Organism   Pseudomonas putida strain BS3701     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2805398..2815895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0H12_RS12835 (H0H12_12835) - 2806408..2806587 (+) 180 WP_180689905.1 hypothetical protein -
  H0H12_RS12840 (H0H12_12840) - 2806762..2807169 (+) 408 WP_047604708.1 hypothetical protein -
  H0H12_RS12845 (H0H12_12845) - 2807220..2807981 (-) 762 WP_180689906.1 hypothetical protein -
  H0H12_RS12850 (H0H12_12850) - 2808152..2808295 (+) 144 WP_180689907.1 hypothetical protein -
  H0H12_RS12855 (H0H12_12855) - 2808459..2808680 (+) 222 WP_180689908.1 hypothetical protein -
  H0H12_RS12860 (H0H12_12860) - 2808704..2809249 (-) 546 WP_180689909.1 hypothetical protein -
  H0H12_RS12865 (H0H12_12865) - 2809355..2809732 (+) 378 WP_180689910.1 hypothetical protein -
  H0H12_RS12870 (H0H12_12870) - 2809793..2810155 (-) 363 WP_180689911.1 hypothetical protein -
  H0H12_RS12875 (H0H12_12875) ssb 2810398..2810895 (-) 498 WP_180689912.1 single-stranded DNA-binding protein Machinery gene
  H0H12_RS12880 (H0H12_12880) - 2810892..2811230 (-) 339 WP_180689913.1 hypothetical protein -
  H0H12_RS12885 (H0H12_12885) - 2811249..2811632 (-) 384 WP_180689914.1 response regulator transcription factor -
  H0H12_RS12890 (H0H12_12890) - 2811639..2812490 (-) 852 WP_180689915.1 ParB N-terminal domain-containing protein -
  H0H12_RS12895 (H0H12_12895) - 2813049..2813369 (+) 321 WP_180689916.1 DUF1654 domain-containing protein -
  H0H12_RS12900 (H0H12_12900) - 2813407..2813850 (-) 444 WP_180689917.1 hypothetical protein -
  H0H12_RS12905 (H0H12_12905) - 2813847..2814689 (-) 843 WP_180689918.1 hypothetical protein -
  H0H12_RS12910 (H0H12_12910) - 2814751..2815602 (-) 852 WP_180689919.1 S24 family peptidase -
  H0H12_RS12915 (H0H12_12915) - 2815691..2815867 (+) 177 WP_180689920.1 Cro/CI family transcriptional regulator -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18504.66 Da        Isoelectric Point: 7.3224

>NTDB_id=466858 H0H12_RS12875 WP_180689912.1 2810398..2810895(-) (ssb) [Pseudomonas putida strain BS3701]
MSRGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKIERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGSRSQGQQPGQVPDRQPQQRRPARQQPNQQAAPPDHDSFDDDIPFAPLH
HLAGA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=466858 H0H12_RS12875 WP_180689912.1 2810398..2810895(-) (ssb) [Pseudomonas putida strain BS3701]
ATGAGCCGCGGGGTAAACAAGGTCATCCTGGTCGGCACCTGCGGCCAAGACCCAGAGGTGCGCTACTTGCCCAATGGCAA
TGCCGTCACCAACCTCAGCCTAGCCACCAGCGAGCAGTGGACCGACAAGCAGTCTGGCCAGAAGATCGAGCGCACCGAGT
GGCACCGTGTGTCGCTGTTCGGGAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAAGGCTCCCAGTGCTACATCGAG
GGCAAGCTTCAGACACGCGAGTGGGAGAAGGACGGCATCAAGCGCTACACCACGGAAATCATCGTCGACATCAACGGCAC
GATGCAGCTGCTCGGCAGCCGGTCGCAGGGTCAGCAGCCAGGCCAGGTGCCAGATCGGCAACCGCAACAACGCCGGCCGG
CGCGCCAGCAGCCGAACCAACAGGCGGCGCCACCTGATCACGACAGCTTCGACGACGATATCCCGTTCGCCCCACTCCAC
CACCTGGCGGGCGCATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D6ABZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.062

100

0.612
  ssb Glaesserella parasuis strain SC1401

47.541

100

0.527
  ssb Neisseria meningitidis MC58

44.382

100

0.479
  ssb Neisseria gonorrhoeae MS11

43.82

100

0.473