Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0H12_RS10045 Genome accession   NZ_CP059052
Coordinates   2227251..2227790 (-) Length   179 a.a.
NCBI ID   WP_064491397.1    Uniprot ID   A0A179S2Q3
Organism   Pseudomonas putida strain BS3701     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2222251..2232790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0H12_RS30030 - 2222831..2223130 (+) 300 WP_257645160.1 hypothetical protein -
  H0H12_RS10005 (H0H12_10005) - 2223137..2223574 (-) 438 WP_180688021.1 hypothetical protein -
  H0H12_RS10010 (H0H12_10010) - 2223652..2223831 (+) 180 WP_180689645.1 hypothetical protein -
  H0H12_RS30035 - 2223828..2224055 (-) 228 WP_257645161.1 hypothetical protein -
  H0H12_RS30040 - 2224076..2224213 (-) 138 WP_257645162.1 hypothetical protein -
  H0H12_RS10020 (H0H12_10020) - 2224326..2224892 (+) 567 WP_180689646.1 hypothetical protein -
  H0H12_RS10025 (H0H12_10025) - 2224957..2225340 (-) 384 WP_180689647.1 hypothetical protein -
  H0H12_RS10030 (H0H12_10030) yejK 2225355..2226365 (-) 1011 WP_180689648.1 nucleoid-associated protein YejK -
  H0H12_RS10035 (H0H12_10035) - 2226463..2226720 (+) 258 WP_180689649.1 hypothetical protein -
  H0H12_RS10040 (H0H12_10040) - 2226700..2227008 (-) 309 WP_180689650.1 hypothetical protein -
  H0H12_RS10045 (H0H12_10045) ssb 2227251..2227790 (-) 540 WP_064491397.1 single-stranded DNA-binding protein Machinery gene
  H0H12_RS10050 (H0H12_10050) - 2227799..2228470 (-) 672 WP_180689651.1 3'-5' exonuclease -
  H0H12_RS10055 (H0H12_10055) - 2228467..2229333 (-) 867 WP_064614147.1 ATP-binding protein -
  H0H12_RS10060 (H0H12_10060) - 2229344..2229490 (-) 147 WP_154670331.1 hypothetical protein -
  H0H12_RS10065 (H0H12_10065) - 2229498..2230595 (-) 1098 WP_180689652.1 hypothetical protein -
  H0H12_RS10070 (H0H12_10070) - 2230753..2230947 (-) 195 WP_015269564.1 hypothetical protein -
  H0H12_RS10075 (H0H12_10075) - 2230944..2231174 (-) 231 WP_064491400.1 hypothetical protein -
  H0H12_RS10080 (H0H12_10080) - 2231171..2231425 (-) 255 WP_100774027.1 hypothetical protein -
  H0H12_RS10085 (H0H12_10085) - 2231801..2232073 (-) 273 WP_180689653.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20264.35 Da        Isoelectric Point: 7.2418

>NTDB_id=466857 H0H12_RS10045 WP_064491397.1 2227251..2227790(-) (ssb) [Pseudomonas putida strain BS3701]
MARGVNKVILVGTCGQDPEVRYMPNGNAVTTLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEVVVDINGTMQLLGGRQDSQSGGQQQQQRPPQQQRQQRQQPRQQHSYNQNDNYGQQSQQAAP
PDNFDDDIPFAPLHYLAGA

Nucleotide


Download         Length: 540 bp        

>NTDB_id=466857 H0H12_RS10045 WP_064491397.1 2227251..2227790(-) (ssb) [Pseudomonas putida strain BS3701]
ATGGCCCGCGGAGTAAACAAAGTCATCCTGGTCGGCACCTGCGGCCAGGACCCCGAGGTCCGCTACATGCCCAACGGCAA
TGCAGTGACCACCCTTAGCCTGGCTACCAGTGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTTGAGCGCACCGAAT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAATGCTACATCGAA
GGCAAGCTGCAGACCCGCGAATGGGAGAAGGACGGCATCAAGCGCTACACCACCGAAGTGGTCGTCGACATCAACGGCAC
CATGCAGCTGCTGGGCGGCCGACAGGACAGCCAGAGCGGCGGCCAGCAGCAACAGCAGCGACCGCCTCAACAGCAGCGGC
AACAGCGTCAGCAGCCTCGCCAGCAGCACAGCTACAACCAGAATGACAACTACGGACAGCAGAGCCAGCAGGCCGCGCCG
CCGGACAACTTCGACGACGACATCCCGTTCGCCCCGCTCCACTACCTGGCGGGCGCATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A179S2Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.192

98.883

0.575
  ssb Glaesserella parasuis strain SC1401

47.283

100

0.486
  ssb Neisseria meningitidis MC58

46.591

98.324

0.458
  ssb Neisseria gonorrhoeae MS11

46.591

98.324

0.458