Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0A38_RS11480 Genome accession   NZ_CP059048
Coordinates   2339976..2340476 (-) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis strain LAC460     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2334976..2345476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A38_RS11455 (H0A38_11385) gnd 2336046..2336951 (-) 906 WP_032398514.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  H0A38_RS11460 (H0A38_11390) - 2337316..2338164 (+) 849 WP_012898662.1 MurR/RpiR family transcriptional regulator -
  H0A38_RS11465 (H0A38_11395) - 2338202..2338510 (+) 309 WP_017865196.1 DUF960 domain-containing protein -
  H0A38_RS11470 (H0A38_11400) - 2338584..2339357 (-) 774 WP_129881196.1 metallophosphoesterase -
  H0A38_RS11475 (H0A38_11405) rpsR 2339557..2339802 (-) 246 WP_003131952.1 30S ribosomal protein S18 -
  H0A38_RS11480 (H0A38_11410) ssb 2339976..2340476 (-) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  H0A38_RS11485 (H0A38_11415) rpsF 2340506..2340799 (-) 294 WP_003131954.1 30S ribosomal protein S6 -
  H0A38_RS11490 (H0A38_11420) - 2340991..2341845 (-) 855 WP_064973724.1 undecaprenyl-diphosphate phosphatase -
  H0A38_RS11495 (H0A38_11425) - 2342368..2343834 (+) 1467 WP_017865200.1 amino acid permease -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=466789 H0A38_RS11480 WP_003131953.1 2339976..2340476(-) (ssb) [Lactococcus lactis strain LAC460]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=466789 H0A38_RS11480 WP_003131953.1 2339976..2340476(-) (ssb) [Lactococcus lactis strain LAC460]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCGCCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373