Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   H0A38_RS08975 Genome accession   NZ_CP059048
Coordinates   1853534..1854523 (-) Length   329 a.a.
NCBI ID   WP_129881037.1    Uniprot ID   -
Organism   Lactococcus lactis strain LAC460     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1848534..1859523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A38_RS08960 (H0A38_08905) - 1849900..1850826 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  H0A38_RS08965 (H0A38_08910) - 1850980..1851663 (-) 684 WP_033899351.1 O-methyltransferase -
  H0A38_RS08970 (H0A38_08915) pepF 1851666..1853471 (-) 1806 WP_129881036.1 oligoendopeptidase F Regulator
  H0A38_RS08975 (H0A38_08920) coiA 1853534..1854523 (-) 990 WP_129881037.1 competence protein CoiA Machinery gene
  H0A38_RS08980 (H0A38_08925) - 1854597..1855682 (-) 1086 WP_012898312.1 YdcF family protein -
  H0A38_RS08985 (H0A38_08930) - 1855844..1856692 (-) 849 WP_010906111.1 alpha/beta hydrolase -
  H0A38_RS08990 (H0A38_08935) - 1856884..1858305 (-) 1422 WP_012898314.1 NCS2 family permease -
  H0A38_RS08995 (H0A38_08940) - 1858612..1859448 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39491.19 Da        Isoelectric Point: 9.0795

>NTDB_id=466766 H0A38_RS08975 WP_129881037.1 1853534..1854523(-) (coiA) [Lactococcus lactis strain LAC460]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGKGRLIEQLRLPFLSKKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFLINFQQNSFKEVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=466766 H0A38_RS08975 WP_129881037.1 1853534..1854523(-) (coiA) [Lactococcus lactis strain LAC460]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGAAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCAAAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAGAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.847

99.088

0.742
  coiA Streptococcus pneumoniae TIGR4

42.857

97.872

0.419
  coiA Streptococcus pneumoniae Rx1

42.857

97.872

0.419
  coiA Streptococcus pneumoniae D39

42.857

97.872

0.419
  coiA Streptococcus pneumoniae R6

42.857

97.872

0.419
  coiA Streptococcus mitis NCTC 12261

42.633

96.96

0.413