Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HYH04_RS15670 Genome accession   NZ_CP059047
Coordinates   3395668..3396195 (-) Length   175 a.a.
NCBI ID   WP_004856483.1    Uniprot ID   A0AAP1MZU7
Organism   Raoultella ornithinolytica strain DSM 16926     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3390668..3401195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYH04_RS15660 (HYH04_15660) - 3391081..3393342 (-) 2262 WP_015585362.1 TonB-dependent siderophore receptor -
  HYH04_RS15665 (HYH04_15665) - 3394020..3395570 (+) 1551 WP_180553309.1 lytic transglycosylase F -
  HYH04_RS15670 (HYH04_15670) ssb 3395668..3396195 (-) 528 WP_004856483.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HYH04_RS15675 (HYH04_15675) uvrA 3396442..3399267 (+) 2826 WP_004856481.1 excinuclease ABC subunit UvrA -
  HYH04_RS15680 (HYH04_15680) - 3399268..3399624 (-) 357 WP_004856479.1 MmcQ/YjbR family DNA-binding protein -
  HYH04_RS15685 (HYH04_15685) - 3399628..3400044 (-) 417 WP_004856477.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HYH04_RS15690 (HYH04_15690) aphA 3400190..3400903 (-) 714 WP_004856476.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18790.84 Da        Isoelectric Point: 5.2456

>NTDB_id=466727 HYH04_RS15670 WP_004856483.1 3395668..3396195(-) (ssb) [Raoultella ornithinolytica strain DSM 16926]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEIVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=466727 HYH04_RS15670 WP_004856483.1 3395668..3396195(-) (ssb) [Raoultella ornithinolytica strain DSM 16926]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAACTGCGTACCCGTAAATGGACTGACCAATCTGGTCAGGAAAAATACACCACCGAGATCGTGGTTAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCAGGCGCTCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTTAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGGCACCGGCAGCA
CCTTCTAACGAACCCCCGATGGATTTCGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.766
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.617
  ssb Neisseria meningitidis MC58

48.603

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.497