Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZZ03_RS17720 Genome accession   NZ_CP059045
Coordinates   3816452..3816988 (-) Length   178 a.a.
NCBI ID   WP_004386202.1    Uniprot ID   A0A2S9UB01
Organism   Cronobacter sakazakii strain 5563_17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3806219..3816292 3816452..3816988 flank 160


Gene organization within MGE regions


Location: 3806219..3816988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZZ03_RS17695 (HZZ03_17695) avs4 3806219..3810982 (-) 4764 WP_180552803.1 AVAST type 4 anti-phage nuclease Avs4 -
  HZZ03_RS17700 (HZZ03_17700) - 3811058..3811477 (-) 420 WP_044702301.1 hypothetical protein -
  HZZ03_RS17705 (HZZ03_17705) - 3811470..3813503 (-) 2034 WP_044702299.1 integrase -
  HZZ03_RS17710 (HZZ03_17710) - 3813496..3815055 (-) 1560 WP_044702307.1 site-specific integrase -
  HZZ03_RS17715 (HZZ03_17715) - 3815045..3816292 (-) 1248 WP_044702296.1 site-specific integrase -
  HZZ03_RS17720 (HZZ03_17720) ssb 3816452..3816988 (-) 537 WP_004386202.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19109.11 Da        Isoelectric Point: 5.2358

>NTDB_id=466708 HZZ03_RS17720 WP_004386202.1 3816452..3816988(-) (ssb) [Cronobacter sakazakii strain 5563_17]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQQQ
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=466708 HZZ03_RS17720 WP_004386202.1 3816452..3816988(-) (ssb) [Cronobacter sakazakii strain 5563_17]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCAACGTCCGAATCCTGGCGCGATAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACAGCGTCGTGCTGTACGGCAAGCTGGCGGAAGTCGCTGGCGAATACCTGCGCAAAGGCTCGCAGGTGTACATC
GAAGGCCAGCTGCGTACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTTGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCAGGCGGCAACATGGGCGGCGGTCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGCGGCGCGCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAACAGCAG
GCGCCAGCGCCTTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S9UB01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.764
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.607
  ssb Neisseria meningitidis MC58

47.802

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.802

100

0.489